Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq13163 132 4e-26 seq13242 95.1 1e-14 seq13189 91.5 1e-13 >seq13163 Length=1194233 Score = 132 bits (146), Expect = 4e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || |||||||||||||| || |||||||| |||||| |||| || ||| | ||| Sbjct 710053 ATGCAGATCTTCGTAAAGACTCTCACGGGCAAAACCATCACCCTCGAAGTCGAAGCTTCC 709994 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || || | ||| |||||| || || | || || || ||| Sbjct 709993 GACACCATAGAAAACGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCTCCGGATCAG 709934 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||| |||| ||||||||||||||| |||||||| | ||| | ||| ||||| Sbjct 709933 CAGCGTTTAATCTTCGCTGGCAAACAGCTGGAAGACGGCAGAACTCTTTCCGACTATAAT 709874 Query 31373 ATTCAAAAAGAATCGACTCTTCA 31395 || ||||| ||||| || || || Sbjct 709873 ATCCAAAAGGAATCTACGCTCCA 709851 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 ||||||||||| || || || ||||| || || ||||| |||||| |||| || ||| | Sbjct 712002 AACATGCAAATCTTTGTGAAAACTCTCACTGGAAAAACCATCACCCTCGAGGTAGAAGCT 711943 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| | | |||| |||||| | || || || ||||| | || || || Sbjct 711942 TCTGACACTATTGAAAATGTCAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCGGAT 711883 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||| ||||| || || |||||||| || |||||||| | || | ||| || Sbjct 711882 CAGCAACGTCTGATCTTTGCTGGCAAGCAACTGGAAGACGGCAGAACCCTTTCCGACTAC 711823 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || ||||| || ||||||||||| || Sbjct 711822 AACATCCAGAAGGAATCTACGCTTCATCTGGTCCT 711788 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || |||||||||||||| || |||||||| |||||| | || || ||| | || Sbjct 711771 ATGCAGATCTTCGTAAAGACTCTAACGGGCAAAACCATCACCCTGGAAGTCGAAGCTTCG 711712 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || || | ||| |||||| || || | || || || || Sbjct 711711 GACACCATTGAAAACGTGAAGGCCAAAATCCAGGACAAAGAGGGGATTCCCCCGGATCAA 711652 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| | || ||||| ||||| || | ||||| Sbjct 711651 CAGCGTTTGATTTTCGCCGGCAAGCAACTCGAAGA 711617 >seq13242 Length=2670346 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 57915 AAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGG 57974 |||||||| | ||| || | || ||||| || || | || || || | || | Sbjct 1010099 AAGAAGGCCAATTGGGCATTGAACTGGATCAATCACGAGAGCGCTACATTTCCTGAACGT 1010158 Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 ||||||||||||| || || || ||||| ||||| ||||| ||||| || || || Sbjct 1010159 GTAATCGCGTTCGCGGCGGTTGAGGGTATCTTCTTCAGCGGCAGTTTTGCAGCGATCTTC 1010218 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| ||||||| || || | ||||| || || || ||||||||||| | || ||||| Sbjct 1010219 TGGCTGAAGAAGCGAGGGGTCATGCCAGGGCTCACCTTTAGCAACGAACTCATCTCGCGA 1010278 Query 58095 GACGA 58099 ||||| Sbjct 1010279 GACGA 1010283 Score = 89.7 bits (98), Expect = 5e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 57669 GAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAAC 57728 |||||| | ||||| || | ||||| || |||||||| ||||| ||||| ||||| Sbjct 1009674 GAGAGATACTTTATCTCTCATATCTTGGCATTCTTCGCCGCTTCCGACGGTATCGTTAAT 1009733 Query 57729 GAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTAC 57788 |||||| | | || ||||| || || ||| || | | || || | || || ||| Sbjct 1009734 GAGAATCTAATTGAGAGATTCAGTCAGGAGGTGAAAATCGCCGAAGCACGTTGTTTCTAC 1009793 Query 57789 GGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACG 57848 || || ||| | || || || ||| | ||||| ||||||||||| | ||||| || || Sbjct 1009794 GGCTTCCAAATCGCGATAGAGAACATCCATTCTGAAATGTATTCTTTGCTCATTGAAACT 1009853 Query 57849 TA 57850 || Sbjct 1009854 TA 1009855 >seq13189 Length=1149699 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/137 (76%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 23267 TCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATT-GCATCGGACACATGAGACT 23325 |||||||| | || || ||||||| |||||| |||| | || |||||||| | ||| Sbjct 401354 TCAAATTCCTCGCCCCAAACATCGGCCAAGCCGGGAGATTCGTAT-GGACACATCAAACT 401296 Query 23326 CCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAA 23385 |||||| |||||| | | ||| |||||||||||||||||||||| || | || || Sbjct 401295 CCACATCTCGTCATTATGCATACGTTTCATAAAAAGATCCGGTATCCAGAGGCCATAAAA 401236 Query 23386 CAGTTCGCGGGCGCGCA 23402 || || ||||| |||| Sbjct 401235 CAAGTCTCGGGCACGCA 401219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445692525363360