Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq13189 136 4e-27 seq13242 113 4e-20 >seq13189 Length=1149699 Score = 136 bits (150), Expect = 4e-27 Identities = 176/241 (73%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 37114 TCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATAT 37173 |||| ||||||||| ||||| |||| ||| |||||||| ||||| | ||| || Sbjct 402443 TCTCGCAATAGGTGGGGATTGACAATGACAAATTCTCCAGACAATACGCGTCTCACGTAG 402384 Query 37174 ATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCA 37233 ||||| | || || |||||||||||||| ||||| | ||| || || | || || || Sbjct 402383 ATATTAGTCGTGTAGGGTTCAATGGACTCGTTATTCCCTAAAATCTGTGCCGTCGAGGCT 402324 Query 37234 GTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTT 37293 || ||||| || ||||||| ||| |||||| | ||| || | ||| |||| || Sbjct 402323 GTTGGCATAGGCGCTATTAAAAGAGAATTTCTTACTCCGTGCTTTGCGATTTTCTTCTTC 402264 Query 37294 AGTTCATTCCAATCCCATAAATCTGTTGGGTT--CTTTAACCACATATCATATTGTAGAA 37351 | ||| | |||||||||||||||||| || || | || |||||| || ||||| || | Sbjct 402263 AATTCGTCCCAATCCCATAAATCTGTCGGCTTAACGTT--CCACATGTCGTATTGGAGGA 402206 Query 37352 T 37352 | Sbjct 402205 T 402205 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 37404 AGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATT 37463 ||||| ||||||||||| ||| | ||| | ||||| | ||||||||| |||| |||||| Sbjct 402086 AGCTAATTCGCAACTAGCTTCCAAGGCGCCGTAATAAAGTGTTTCGAAGATTTTTATATT 402027 Query 37464 TAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAA 37523 | | || ||||||| ||| ||||| | ||| | || || || || |||| ||||| Sbjct 402026 GAGTTCCTTCGCTTCTTTGCTCTCGAAAGGATATCGCATTAGTAGGAATGCATCTGCCAA 401967 Query 37524 ACCCTGAACACCGATACCTA 37543 ||| || | |||||||||| Sbjct 401966 ACCTTGTATCCCGATACCTA 401947 >seq13242 Length=2670346 Score = 113 bits (124), Expect = 4e-20 Identities = 168/238 (71%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 11415 GATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGA 11474 |||| |||| ||| ||||||||| | |||||| | || ||||| || ||||||| Sbjct 1010666 GATTTTATATATT----ACTTTTTCAAATCCTAACGCAACGAACAATCTGTCCGCGACGA 1010611 Query 11475 ATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAA 11534 |||| || || | | |||| | | |||||||| ||||| || || || || | || Sbjct 1010610 ATTCGATGTAGTTACACATGAGTCCGCAATTCATTCCTATCAGTTCGACTGGCAACGCCT 1010551 Query 11535 CTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCT 11594 |||||||| |||||||| || | || ||||| || || || ||| ||| | ||| Sbjct 1010550 GCGTCAAAAATTCCTTTTCAATTTCCACAGCATCCATTATGATAGACTTTACACGTTCGA 1010491 Query 11595 TAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACC 11652 || || |||| | |||||||||||||| || |||||||| || ||||| || Sbjct 1010490 ACGACGGCTTTTGTACGATGTGTTTAAACATTAAGCATGCAAAATCGCAGTGTAATCC 1010433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468447153727520