Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq13163 118 1e-21 seq13242 91.5 1e-13 >seq13163 Length=1194233 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | |||||||||||||| | |||||| || ||||| || ||||| ||| Sbjct 709826 GCCTCCGCGAAGTCGCAAAACTAAGTGGAGCGTAGATTCCTTTTGGATATTATAGTCGGA 709885 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || || |||||| |||||||| ||||| |||| | ||| |||||||| ||||| Sbjct 709886 AAGAGTTCTGCCGTCTTCCAGCTGTTTGCCAGCGAAGATTAAACGCTGCTGATCCGGAGG 709945 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || |||||||| |||||| || | | ||| | ||||||| | || || Sbjct 709946 AATTCCCTCTTTGTCCTGGATTTTGGCCTTCACGTTTTCTATGGTGTCGGAAGCTTCGAC 710005 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | || ||||| || | || |||||||| || ||||| Sbjct 710006 TTCGAGGGTGATGGTTTTGCCCGTGAGAGTCTTTACGAAGATCTGCAT 710053 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| || | |||| |||||| || || || ||||| || ||| Sbjct 711773 CCTCCGCGGAGACGCAGGACCAGATGAAGCGTAGATTCCTTCTGGATGTTGTAGTCGGAA 711832 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || |||||| || || || |||||| ||||||||||||||||||| ||||| Sbjct 711833 AGGGTTCTGCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGGAGGA 711892 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || |||||||| || ||| || ||| | | ||| | ||||| | | || ||| Sbjct 711893 ATACCTTCTTTATCTTGGATCTTAGCTTTGACATTTTCAATAGTGTCAGAAGCTTCTACC 711952 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | || || || || | ||||| || || |||||||| Sbjct 711953 TCGAGGGTGATGGTTTTTCCAGTGAGAGTTTTCACAAAGATTTGCAT 711999 >seq13242 Length=2670346 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 52550 TTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCCA 52609 |||| |||||| | || |||| ||||||||||||| |||||| | |||| | || | Sbjct 1010085 TTCCTTGTGTGGGAAAGAAGGCCAATTGGGCATTGAACTGGATCAATCACGAGAGCGCTA 1010144 Query 52610 CTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTT 52669 | ||| | |||||| | ||||||| || || || ||| | || || || |||| Sbjct 1010145 CATTTCCTGAACGTGTAATCGCGTTCGCGGCGGTTGAGGGTATCTTCTTCAGCGGCAGTT 1010204 Query 52670 TTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAAC 52728 |||| || || || | | || || | ||| | ||||| || ||||| ||||||||| Sbjct 1010205 TTGCAGCGATCTTCTGGCTGAAGAAGCGAGGG-GTCATGCCAGGGCTCACCTTTAGCAAC 1010263 Query 52729 GAGTTGATATCGCGCGACGAAG 52750 || | || ||||| ||||||| Sbjct 1010264 GAACTCATCTCGCGAGACGAAG 1010285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495981789793600