Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq13163 116 4e-21 seq13242 86.0 6e-12 >seq13163 Length=1194233 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||||| || | ||||| |||||||| || || |||||||| ||| Sbjct 711773 CCTCCGCGGAGACGCAGGACCAGATGAAGCGTAGATTCCTTCTGGATGTTGTAGTCGGAA 711832 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || |||||| ||||| || |||||| ||||||||||||||||||| ||||| Sbjct 711833 AGGGTTCTGCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGGAGGA 711892 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || || || ||| | | ||| | ||||| | | |||||| Sbjct 711893 ATACCTTCTTTATCTTGGATCTTAGCTTTGACATTTTCAATAGTGTCAGAAGCTTCTACC 711952 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || || || | ||||| || || |||||||| Sbjct 711953 TCGAGGGTGATGGTTTTTCCAGTGAGAGTTTTCACAAAGATTTGCAT 711999 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | ||||||||||| || | |||||||| ||||| || || || ||| Sbjct 709826 GCCTCCGCGAAGTCGCAAAACTAAGTGGAGCGTAGATTCCTTTTGGATATTATAGTCGGA 709885 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || || |||||| || ||||| ||||| |||| | ||| |||||||| ||||| Sbjct 709886 AAGAGTTCTGCCGTCTTCCAGCTGTTTGCCAGCGAAGATTAAACGCTGCTGATCCGGAGG 709945 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || |||||||| ||||| || | | ||| | ||||| | | ||| || Sbjct 709946 AATTCCCTCTTTGTCCTGGATTTTGGCCTTCACGTTTTCTATGGTGTCGGAAGCTTCGAC 710005 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | || | || ||||| || | || |||||||| || ||||| Sbjct 710006 TTCGAGGGTGATGGTTTTGCCCGTGAGAGTCTTTACGAAGATCTGCAT 710053 >seq13242 Length=2670346 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 50316 AGACTTAATACTCAACGCTTTCGATAATATTTCGTGTGTGCGTAAAAAGGACGATTGGGC 50375 |||||| || | || || |||| | || | |||||| | || |||| | ||||||| Sbjct 1010056 AGACTTCTTATTTAATGCGATCGAGACGCTTCCTTGTGTGGGAAAGAAGGCCAATTGGGC 1010115 Query 50376 ATTGAAATGGACTaaaaacaaaaaaCTTACTTTGGCCGAACGTTTAGTGGCGTTTGCCAT 50435 |||||| |||| || || | | ||| || | |||||| || | ||||| || Sbjct 1010116 ATTGAACTGGATCAATCACGAGAGCGCTACATTTCCTGAACGTGTAATCGCGTTCGCGGC 1010175 Query 50436 AGTTGAAGGTGTGtttttttCCGGTAGCTTTGCAGCCATATTTTACATTAAAACCTTAGG 50495 ||||| ||| | || || ||| || |||||||| || || | | || | ||| Sbjct 1010176 GGTTGAGGGTATCTTCTTCAGCGGCAGTTTTGCAGCGATCTTCTGGCTGAAGAAGCGAGG 1010235 Query 50496 CATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGAAG 50545 | ||||| || ||||| ||||||||||| | || ||||| ||||||| Sbjct 1010236 GGTCATGCCAGGGCTCACCTTTAGCAACGAACTCATCTCGCGAGACGAAG 1010285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506930375038560