Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq12929 86.0 7e-12 >seq12929 Length=54150 Score = 86.0 bits (94), Expect = 7e-12 Identities = 209/313 (67%), Gaps = 8/313 (3%) Strand=Plus/Plus Query 164393 ATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCA 164452 ||||| | ||| | ||||||| | ||||| | || ||| || || || || Sbjct 2687 ATTGGGACTTTCAGAAAATGGGTATTGGTGGCTTGGACAAAGAGTTCACTGCCATCTTTC 2746 Query 164453 GACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAAC 164512 || |||||||||| ||| | |||| | || || | | |||| ||||| |||| Sbjct 2747 GAAGAGCATTTGCATCTCGCGTTTTTCCCACGGAGATTGTCACTCAATTGGGCTGCAAAC 2806 Query 164513 ATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGAT 164572 || | |||||||| || || ||||||| ||||| || || || ||||||||||| Sbjct 2807 ATGTGAAAGGAATCTTGTTGTATGGACCACCTGGCACGGGCAAGACGTTAATGGCTCGTC 2866 Query 164573 GCAT-TGCTCAAGCTTTTAAAT---CGCGACCCGTTAAAATTGTTAATGGTCCTGAATTA 164628 || || ||| | |||||| | || ||| |||||||| ||||| || | | Sbjct 2867 AAATAGGCACAA--TGTTAAATGCGAGGGAGCCG--AAAATTGTAAATGGCCCACAGATT 2922 Query 164629 TTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAA 164688 || | ||||| || || ||| || |||||| | |||| |||||| || || ||| Sbjct 2923 TTAGATAAATACGTTGGAGAGAGCGAGGCTAATATCAGAAGATTGTTTGCCGATGCGGAA 2982 Query 164689 GAAGAACAAAAGA 164701 || || |||||| Sbjct 2983 GACGAGGAAAAGA 2995 Score = 84.2 bits (92), Expect = 3e-11 Identities = 107/146 (73%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 164783 TTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATA 164842 |||| ||| |||| ||||||||| | ||| | || || |||||||| ||| ||||||| Sbjct 3184 TTCACGATACAGTAGTTAATCAGCTTCTTGCAAAGATCGATGGTGTCGAACAATTAAATA 3243 Query 164843 ATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGAC 164902 | ||| | || | ||||||||||| | || | |||||||| || || ||| ||| Sbjct 3244 ACATTCTTGTTATTGGTATGACCAATAGGAAGGACATGATTGATGAGGCCTTGTTAAGAC 3303 Query 164903 CTGGTCGATTAGAATTGAAAATAGAA 164928 |||| |||| || | ||||| ||| Sbjct 3304 CTGGCAGATTGGAGGT-AAAATTGAA 3328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595773249112800