Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq13236 123 1e-23 seq13248 120 2e-22 seq13190 116 2e-21 seq13131 114 7e-21 seq13230 109 3e-19 >seq13236 Length=2414161 Score = 123 bits (136), Expect = 1e-23 Identities = 93/108 (86%), Gaps = 3/108 (3%) Strand=Plus/Minus Query 11430 AATATAGAATTAATAAAAAATCAAA--TTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 ||| || |||| |||||| ||| ||||||||||| |||||||||| |||||||| Sbjct 526808 AATGTAAAATTTGAAAAAAAAAAAAGGTTGGCCCATGAGGGGATCGAACCCGCGACCTTC 526749 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC-GTCGA 11534 ||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 526748 GCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCAGTCGA 526701 >seq13248 Length=3196625 Score = 120 bits (132), Expect = 2e-22 Identities = 81/90 (90%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 11440 TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||| |||||||| ||||||||||| |||||||||| |||||||||||||||||||| Sbjct 2274895 TAAAAAAAAATCGC-TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 2274953 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||||||||||||||||||| Sbjct 2274954 CGACGCTCTAACCAACTGAGCTAATGGGCC 2274983 >seq13190 Length=1176293 Score = 116 bits (128), Expect = 2e-21 Identities = 80/90 (89%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| || |||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 405543 AAAAAAAAACGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACG 405484 Query 11505 CTCTRACCAACTGAGCTAATGGGCC-GTCG 11533 |||| |||||||||||||||||||| |||| Sbjct 405483 CTCTAACCAACTGAGCTAATGGGCCTGTCG 405454 >seq13131 Length=480535 Score = 114 bits (126), Expect = 7e-21 Identities = 80/91 (88%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 || |||||||| || |||||||||| |||||||||| ||||||||||||||||||| Sbjct 277967 TTTATAAAAAA--AATCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 278024 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| ||||||||||||||| |||| Sbjct 278025 ACGACGCTCTAACCAACTGAGCTAATAGGCC 278055 >seq13230 Length=2258499 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| |||| |||||||||||||||||||||||| |||||| Sbjct 723239 TGGCCCATGAGGGGATCGAACCCGCGACTTTCGCGTTATTAGCACGACGCTCTAACCAAC 723180 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 723179 TGAGCTAATGGGCC 723166 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261448947761608