Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq13181 206 4e-49 seq12944 179 6e-41 seq13230 163 4e-36 >seq13181 Length=1089730 Score = 206 bits (228), Expect = 4e-49 Identities = 189/239 (79%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | ||||||| | ||||| ||||||||||| || ||||||||||| || ||| Sbjct 868118 GCGAAGAGACATCGCAAAGTACTTCGCGATAACATCCAGGGTATCACCAAGCCGGCCATC 868059 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| |||||||| |||||||||||| |||| |||||| |||| || |||| | Sbjct 868058 CGTCGTCTGGCGCGTCGTGGCGGAGTCAAGCGTATCTCCGGATTGATCTACGAGGAGACT 867999 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||| | ||||| | | |||||| | ||| || || ||| |||||| Sbjct 867998 CGTGGTGTGCTGAAGGTGTTCCTAGAAAACGTTATTCGTGACGCGGTCACCTACACCGAG 867939 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||||| | ||||||||||| | ||||| ||||||| || |||| || ||||| Sbjct 867938 CACGCTAAGAGGAAGACTGTCACTGCTATGGACGTCGTCTACGCCCTGAAGCGCCAAGG 867880 >seq12944 Length=62557 Score = 179 bits (198), Expect = 6e-41 Identities = 188/247 (76%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| ||||||||||| || ||||||||||| || |||||||||||||| || ||||| Sbjct 20036 TCTTCGCGATAACATCCAGGGTATCACCAAGCCGGCAATCCGTCGTCTGGCGCGGCGTGG 19977 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || ||||||||| |||| || ||| |||| || |||| ||| | || | ||| |||| Sbjct 19976 CGGCGTCAAGCGTATCTCCGGCTTGATCTACGAGGAGACTCGCGGCGTGCTCAAGGTCTT 19917 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 |||| ||| ||| || | ||||| || ||| ||||||||||| ||| | ||||| || Sbjct 19916 CCTCGAGAACGTGATTCGCGATGCCGTCACCTACACCGAGCACGCGAAAAGGAAGACCGT 19857 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || ||||||| | || || || |||| || |||||| | | | || || ||||| Sbjct 19856 GACTGCCATGGACGTTGTATACGCCCTGAAGCGCCAAGGCAGAACTCTGTACGGCTTTGG 19797 Query 16693 AAGTTAA 16699 | ||||| Sbjct 19796 AGGTTAA 19790 >seq13230 Length=2258499 Score = 163 bits (180), Expect = 4e-36 Identities = 183/245 (75%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||||||||| || |||||||||||||| || ||||| |||| | ||||| || Sbjct 491764 CGTGATAACATCCAGGGCATCACCAAGCCAGCCATTCGTCGATTGGCCAGACGTGGCGGT 491823 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||||||||| | ||||| ||| | || || |||| || | ||| |||| ||||||| Sbjct 491824 GTCAAGCGTATTTCTGGCTTGATTTACGAGGAGACCCGAGGTGTCCTGAAAGTCTTCCTG 491883 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | | ||| || | ||| ||| || ||| ||||||||||| || | ||||| || ||| Sbjct 491884 GAAAACGTCATTCGTGACGCTGTCACCTACACCGAGCACGCCAAGAGGAAGACAGTGACC 491943 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 ||||||| ||||||| || |||||||||| ||| | | | || ||||| || || Sbjct 491944 GCCATGGACGTCGTCTACGCTCTGAAACGTCAGGGCAGAACCCTGTACGGTTTCGGTGGT 492003 Query 16697 TAATC 16701 ||||| Sbjct 492004 TAATC 492008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79063078117794