Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq13242 273 1e-68 seq4914 140 2e-28 seq11334 136 3e-27 seq12587 131 1e-25 seq12297 131 1e-25 seq11282 131 1e-25 seq12446 127 1e-24 seq6880 116 2e-21 >seq13242 Length=2670346 Score = 273 bits (302), Expect = 1e-68 Identities = 297/394 (75%), Gaps = 0/394 (0%) Strand=Plus/Plus Query 6158 CACGATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAAT 6217 ||| ||||||| | ||||||| ||||| ||||| ||||| || || |||||||| || Sbjct 998975 CACCATGGGGAGCTTGAACGTCAATCGCAATGTCAGCGACGCCTTTTATCGCTACAAGAT 999034 Query 6218 GCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAA 6277 |||||| ||| || ||||| || || ||||| ||||||||||| || || || || || Sbjct 999035 GCCGCGGATCCAGGCGAAGGTGGAAGGCAAGGGGAACGGTATTAAGACGGTGATCGTTAA 999094 Query 6278 CATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGG 6337 ||| || || || |||||| |||| || || || || |||||||| || |||||||| Sbjct 999095 TATGGTGGATGTGGCGAAGGCGATCGGTCGTCCGGCTACGTACCCGACCAAGTATTTCGG 999154 Query 6338 GTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGG 6397 ||||| | ||||| ||||||||||| || |||||||||||| |||||||| ||||| Sbjct 999155 TTGCGAGTTGGGCGCCCAGACGCAGTTCGACTTCAAAAACGAGCGTTTCATCGTCAACGG 999214 Query 6398 ATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCT 6457 ||||| || | | |||||||||||| | || || || || || || |||| ||| || Sbjct 999215 CTCGCACGACGCGACGAAGCTGCAGGACCTGCTGGATGGTTTCATCCGAAAGTATGTCCT 999274 Query 6458 GTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTGTCTACCAAGAGAAACACCAT 6517 || | || ||||| || ||||||||||| | || || | |||| | ||| || Sbjct 999275 TTGCCCGGCCTGCGACAATCCGGAGACCGAATTGATGGTTAGCTCGAAGAAAGGCACGAT 999334 Query 6518 CTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGC 6551 ||| ||||| ||||| |||||||| | |||||| Sbjct 999335 CTCGCAGGGTTGCAAGGCGTGCGGACATCATGGC 999368 >seq4914 Length=1671 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1228 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1169 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1168 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1134 >seq11334 Length=6282 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||| |||||||||||||||||||||||||| || |||||||| Sbjct 176 AAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 235 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 236 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 270 >seq12587 Length=19744 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||| ||||||||||||||||| |||||||| || |||||||| Sbjct 7050 AAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGATAGAAGATAGGGACAGTGGGAATCTCGT 7109 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 7110 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 7144 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||| |||||||||||||||||||||||||| || |||||||| Sbjct 14886 AAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 14945 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||||| |||||||||||||||| Sbjct 14946 TAATCCATTCATGCGCGTTACTAATTAGATGACGA 14980 >seq12297 Length=18639 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||| |||||||||||||||||||||||||| || |||||||| Sbjct 14069 AAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGATAGTAGATAGGGTCAGTGGGAATCTCGT 14128 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||| ||| Sbjct 14129 TAATCCATTCATGCGCGTCACTAATTAGATGCCGA 14163 >seq11282 Length=6117 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||| |||||||||||||||||||||||||| || |||||||| Sbjct 5773 AAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 5714 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||| ||||||||||||||||||||| Sbjct 5713 TAATCCATTCATGAGCGTCACTAATTAGATGACGA 5679 >seq12446 Length=16138 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 || |||||||||||||| |||||||||||||||||||||||||| || |||||||| Sbjct 12746 AAACCCGTTCCCTTGGCAGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 12805 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||| |||||||||||||||||||| Sbjct 12806 TAATCCATTCATGCACGTCACTAATTAGATGACGA 12840 >seq6880 Length=2162 Score = 116 bits (128), Expect = 2e-21 Identities = 81/92 (88%), Gaps = 5/92 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||| |||||||||||| |||||||||||| ||||||||||||| || |||||||| Sbjct 702 AAGCTCGTTCCCTTGGCAGTGGTTTCGCTACATAGTAGATAGGGACAGTGGGAATCTCGT 643 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGA 25988 |||||| ||||||||||||| ||||||||||| Sbjct 642 TAATCCATTCATGCGCGTCATTAATTAGATGA 611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334893078603398