Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06]
13,258 sequences; 287,900,827 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq13242 273 1e-68
seq4914 140 2e-28
seq11334 136 3e-27
seq12587 131 1e-25
seq12297 131 1e-25
seq11282 131 1e-25
seq12446 127 1e-24
seq6880 116 2e-21
>seq13242
Length=2670346
Score = 273 bits (302), Expect = 1e-68
Identities = 297/394 (75%), Gaps = 0/394 (0%)
Strand=Plus/Plus
Query 6158 CACGATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAAT 6217
||| ||||||| | ||||||| ||||| ||||| ||||| || || |||||||| ||
Sbjct 998975 CACCATGGGGAGCTTGAACGTCAATCGCAATGTCAGCGACGCCTTTTATCGCTACAAGAT 999034
Query 6218 GCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAA 6277
|||||| ||| || ||||| || || ||||| ||||||||||| || || || || ||
Sbjct 999035 GCCGCGGATCCAGGCGAAGGTGGAAGGCAAGGGGAACGGTATTAAGACGGTGATCGTTAA 999094
Query 6278 CATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGG 6337
||| || || || |||||| |||| || || || || |||||||| || ||||||||
Sbjct 999095 TATGGTGGATGTGGCGAAGGCGATCGGTCGTCCGGCTACGTACCCGACCAAGTATTTCGG 999154
Query 6338 GTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGG 6397
||||| | ||||| ||||||||||| || |||||||||||| |||||||| |||||
Sbjct 999155 TTGCGAGTTGGGCGCCCAGACGCAGTTCGACTTCAAAAACGAGCGTTTCATCGTCAACGG 999214
Query 6398 ATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCT 6457
||||| || | | |||||||||||| | || || || || || || |||| ||| ||
Sbjct 999215 CTCGCACGACGCGACGAAGCTGCAGGACCTGCTGGATGGTTTCATCCGAAAGTATGTCCT 999274
Query 6458 GTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTGTCTACCAAGAGAAACACCAT 6517
|| | || ||||| || ||||||||||| | || || | |||| | ||| ||
Sbjct 999275 TTGCCCGGCCTGCGACAATCCGGAGACCGAATTGATGGTTAGCTCGAAGAAAGGCACGAT 999334
Query 6518 CTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGC 6551
||| ||||| ||||| |||||||| | ||||||
Sbjct 999335 CTCGCAGGGTTGCAAGGCGTGCGGACATCATGGC 999368
>seq4914
Length=1671
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1228 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1169
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 1168 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1134
>seq11334
Length=6282
Score = 136 bits (150), Expect = 3e-27
Identities = 87/95 (92%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 176 AAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 235
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 236 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 270
>seq12587
Length=19744
Score = 131 bits (144), Expect = 1e-25
Identities = 86/95 (91%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||| ||||||||||||||||| |||||||| || ||||||||
Sbjct 7050 AAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGATAGAAGATAGGGACAGTGGGAATCTCGT 7109
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 7110 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 7144
Score = 131 bits (144), Expect = 1e-25
Identities = 86/95 (91%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 14886 AAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 14945
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||| ||||||||||||||||
Sbjct 14946 TAATCCATTCATGCGCGTTACTAATTAGATGACGA 14980
>seq12297
Length=18639
Score = 131 bits (144), Expect = 1e-25
Identities = 86/95 (91%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 14069 AAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGATAGTAGATAGGGTCAGTGGGAATCTCGT 14128
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| |||||||||||||||||||||||| |||
Sbjct 14129 TAATCCATTCATGCGCGTCACTAATTAGATGCCGA 14163
>seq11282
Length=6117
Score = 131 bits (144), Expect = 1e-25
Identities = 86/95 (91%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 5773 AAGCCCGTTCCCTTGGCAGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 5714
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| |||||| |||||||||||||||||||||
Sbjct 5713 TAATCCATTCATGAGCGTCACTAATTAGATGACGA 5679
>seq12446
Length=16138
Score = 127 bits (140), Expect = 1e-24
Identities = 85/95 (89%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|| |||||||||||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 12746 AAACCCGTTCCCTTGGCAGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 12805
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||| ||||||||||||||||||||
Sbjct 12806 TAATCCATTCATGCACGTCACTAATTAGATGACGA 12840
>seq6880
Length=2162
Score = 116 bits (128), Expect = 2e-21
Identities = 81/92 (88%), Gaps = 5/92 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||| |||||||||||| |||||||||||| ||||||||||||| || ||||||||
Sbjct 702 AAGCTCGTTCCCTTGGCAGTGGTTTCGCTACATAGTAGATAGGGACAGTGGGAATCTCGT 643
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGA 25988
|||||| ||||||||||||| |||||||||||
Sbjct 642 TAATCCATTCATGCGCGTCATTAATTAGATGA 611
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334893078603398
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |