Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq13163 178 2e-39 seq13245 158 2e-33 seq13175 96.9 6e-15 >seq13163 Length=1194233 Score = 178 bits (196), Expect = 2e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||||||||| ||||| || ||||| ||||| || || |||||||| ||||| ||||| Sbjct 709827 CCTCCGCGAAGTCGCAAAACTAAGTGGAGCGTAGATTCCTTTTGGATATTATAGTCGGAA 709886 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || || ||||| | ||| || || ||||| || | | || || || || ||| Sbjct 709887 AGAGTTCTGCCGTCTTCCAGCTGTTTGCCAGCGAAGATTAAACGCTGCTGATCCGGAGGA 709946 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || || ||||| || || || ||||| ||| || |||||||| | | ||| ||| Sbjct 709947 ATTCCCTCTTTGTCCTGGATTTTGGCCTTCACGTTTTCTATGGTGTCGGAAGCTTCGACT 710006 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | |||||||||||| |||||||| ||||| ||||| ||||||||| Sbjct 710007 TCGAGGGTGATGGTTTTGCCCGTGAGAGTCTTTACGAAGATCTGCATT 710054 Score = 152 bits (168), Expect = 9e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||||||||| || |||| |||| || ||||| || || || |||||||| || |||| Sbjct 711771 TTCCTCCGCGGAGACGCAGGACCAGATGAAGCGTAGATTCCTTCTGGATGTTGTAGTCGG 711830 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || || || ||||| | ||||| || || || || || | ||| || || || | Sbjct 711831 AAAGGGTTCTGCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGGAG 711890 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| ||||| || ||||| ||||| || ||||| || || ||||| | | ||||| Sbjct 711891 GAATACCTTCTTTATCTTGGATCTTAGCTTTGACATTTTCAATAGTGTCAGAAGCTTCTA 711950 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || | ||||||||||||||| ||||| || || || || || ||||| Sbjct 711951 CCTCGAGGGTGATGGTTTTTCCAGTGAGAGTTTTCACAAAGATTTGCAT 711999 Score = 147 bits (162), Expect = 4e-30 Identities = 146/189 (77%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || || || || ||||| |||||||| | ||||| |||||||| || Sbjct 711584 TTCTGGATGTTGTAGTCTGAAAGAGTCCTGCCATCTTCGAGTTGCTTGCCGGCGAAAATC 711643 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | | ||||| || || ||||| || || ||||| || || || ||||| ||| || Sbjct 711644 AAACGCTGTTGATCCGGGGGAATCCCCTCTTTGTCCTGGATTTTGGCCTTCACGTTTTCA 711703 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453 |||||||| | | ||| ||||||| |||||||||||| ||||| || ||||| ||||| Sbjct 711704 ATGGTGTCCGAAGCTTCGACTTCCAGGGTGATGGTTTTGCCCGTTAGAGTCTTTACGAAG 711763 Query 68454 ATCTGCATT 68462 ||||||||| Sbjct 711764 ATCTGCATT 711772 >seq13245 Length=2836997 Score = 158 bits (174), Expect = 2e-33 Identities = 149/190 (78%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 68272 CTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATA 68331 |||| || ||||| || ||||||||||| | ||||| || | ||| || |||||||| | Sbjct 675195 CTTTCTGTATGTTGTAGTCGGAGAGTGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGA 675136 Query 68332 TGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCT 68391 |||| | || || || || || ||||| |||||||| || ||||| ||||||||| || Sbjct 675135 TGAGCCGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCT 675076 Query 68392 CGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 |||| || || | | || || || | ||||||||| || ||||||||||||||||||| Sbjct 675075 CGATAGTATCGGACGCCTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 675016 Query 68452 ATATCTGCAT 68461 | |||||||| Sbjct 675015 AGATCTGCAT 675006 >seq13175 Length=923006 Score = 96.9 bits (106), Expect = 6e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 68316 TGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATC 68375 ||||| || |||||||| |||||||| || | ||| |||||||| || ||||||||||| Sbjct 562043 TGCTTGCCCGCGAATATCAGTCTTTGCTGATTGGGAGGAATGCCCTCTTTGTCTTGAATT 562102 Query 68376 TTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 || ||||| ||| |||||| ||||| | | || || |||| ||||| ||||| Sbjct 562103 TTAGCCTTCACGTTCTCGATCGTGTCCGAAGCCTCGACCTCCAGCGTGATCGTTTT 562158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921469664127760