Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq13163 111 1e-19 seq13096 82.4 6e-11 >seq13163 Length=1194233 Score = 111 bits (122), Expect = 1e-19 Identities = 171/241 (71%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || ||||| |||||||||||||| |||||||| |||||||| || | Sbjct 711773 CCTCCGCGGAGACGCAGGACCAGATGAAGCGTAGATTCCTTCTGGATGTTGTAGTCGGAA 711832 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| |||| ||||||||| ||||| ||||| || ||||||||| || Sbjct 711833 AGGGTTCTGCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGGAGGA 711892 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTA---TCAGTAGATTCG 34077 | | ||||| | | | | || |||| || | | || || |||| || ||| Sbjct 711893 ATACCTTCTTTAT-CTTGGATCTTAGCTT--TGACATTTTCAATAGTGTCAGAAGCTTCT 711949 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTTAATATG 34137 |||| || || |||||||| || || |||||||||||||||||||| || ||| || Sbjct 711950 ACCTCGAGGGTGATGGTTTTTCCAGTGAGAGTTTTCACAAAGATTTGCATGTTGAATCTG 712009 Query 34138 T 34138 | Sbjct 712010 T 712010 >seq13096 Length=514919 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| |||| ||| |||||||||| || | ||| ||||| ||||||||||| || | Sbjct 6545 ACCACCTCGCAGGCGCAGCACCAAGTGCAAAGTGGATTCCTTTTGAATGTTGTAGTCCGA 6486 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 ||| || |||| ||||| ||||| ||||| || ||||| | |||||||||| Sbjct 6485 CAAAGTTCTGCCGTCCTCCAACTGCTTACCGGCGAAGATCAGCCTCTGCTGATCC 6431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396998241912916