Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq13163 159 8e-34 seq13245 140 8e-28 >seq13163 Length=1194233 Score = 159 bits (176), Expect = 8e-34 Identities = 151/193 (78%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||||||||||||||||| || || | |||||||| | ||||| || ||||| Sbjct 709862 TTCCTTTTGGATATTATAGTCGGAAAGAGTTCTGCCGTCTTCCAGCTGTTTGCCAGCGAA 709921 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| | |||||| ||| || ||||| ||||| ||||||||||| || |||||||| Sbjct 709922 GATTAAACGCTGCTGATCCGGAGGAATTCCCTCTTTGTCCTGGATTTTGGCCTTCACGTT 709981 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 |||||| | ||| | ||| |||||||| ||||| || || || || |||||||| || Sbjct 709982 TTCTATGGTGTCGGAAGCTTCGACTTCGAGGGTGATGGTTTTGCCCGTGAGAGTCTTTAC 710041 Query 288462 GAATATCTGCATT 288474 ||| ||||||||| Sbjct 710042 GAAGATCTGCATT 710054 Score = 136 bits (150), Expect = 9e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| |||||||| | || || ||||||| ||| ||| || ||||| || ||||||| Sbjct 711772 TCCTCCGCGGAGACGCAGGACCAGATGAAGCGTAGATTCCTTCTGGATGTTGTAGTCGGA 711831 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || | |||||||| | ||| || || || ||||||||||| || ||| || Sbjct 711832 AAGGGTTCTGCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGGAGG 711891 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || ||||||||||| ||||| || ||||| || ||||| |||| || | |||||| Sbjct 711892 AATACCTTCTTTATCTTGGATCTTAGCTTTGACATTTTCAATAGTGTCAGAAGCTTCTAC 711951 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| || || || || ||||| || || || || ||||| Sbjct 711952 CTCGAGGGTGATGGTTTTTCCAGTGAGAGTTTTCACAAAGATTTGCAT 711999 Score = 122 bits (134), Expect = 2e-22 Identities = 143/192 (74%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||| | || || | || ||||| | ||| || || ||||| ||| Sbjct 711584 TTCTGGATGTTGTAGTCTGAAAGAGTCCTGCCATCTTCGAGTTGCTTGCCGGCGAAAATC 711643 Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 | |||||||||| || ||| || || ||||| ||||||||||| || ||||||||| Sbjct 711644 AAACGCTGTTGA---TCCGGGGGAATCCCCTCTTTGTCCTGGATTTTGGCCTTCACGTTT 711700 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || | ||| ||||| || ||||| || || || || |||||||| ||| Sbjct 711701 TCAATGGTGTCCGAAGCTTCGACTTCCAGGGTGATGGTTTTGCCCGTTAGAGTCTTTACG 711760 Query 288463 AATATCTGCATT 288474 || ||||||||| Sbjct 711761 AAGATCTGCATT 711772 >seq13245 Length=2836997 Score = 140 bits (154), Expect = 8e-28 Identities = 145/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 |||| || || || ||||||| ||| |||||||| || || | ||||| || ||||||| Sbjct 675195 CTTTCTGTATGTTGTAGTCGGAGAGTGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGA 675136 Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 | || ||||| ||| | ||||| || || || |||||||| || || || ||||| | Sbjct 675135 TGAGCCGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCT 675076 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 | |||| |||| || || || ||||| ||||| ||||| || || || |||||||||| Sbjct 675075 CGATAGTATCGGACGCCTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 675016 Query 288464 ATATCTGCAT 288473 | |||||||| Sbjct 675015 AGATCTGCAT 675006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179454014318924