Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06]
13,258 sequences; 287,900,827 total letters
Query= NC_012696.1
Length=73325
Score E
Sequences producing significant alignments: (Bits) Value
seq12852 194 8e-45
seq12202 192 3e-44
seq8126 131 8e-26
>seq12852
Length=38369
Score = 194 bits (214), Expect = 8e-45
Identities = 413/607 (68%), Gaps = 15/607 (2%)
Strand=Plus/Minus
Query 30697 GAAGACAGAATCTCTGCACTCCAGACAAAAGATCCCGAAAAACTGAAGGTTTATACCGAT 30756
|||||| | || || || || || ||||| || | ||||| || ||||||||||||
Sbjct 23301 GAAGACCGTATTTCAGCTCTGACAACCAAAGACCCTAATAAACTTAAAGTTTATACCGAT 23242
Query 30757 GGTTACGATGGTCACTCTCTACGGGCCTATGGTTACTTTGGTGATCAGATGCCAGATATC 30816
|| || |||||||| ||||| | || | | ||| || || || || ||||||||||||
Sbjct 23241 GGGTATGATGGTCATTCTCTCAGAGCATTCGCTTATTTCGGCGAGCACATGCCAGATATC 23182
Query 30817 GACCCTTCTTCTGTGGATTCGATCAACTCCATTGCGAAGAAGTA-CAAACCTCTGAGACA 30875
| | | | | | ||||| |||||| | ||| | | || | |||||
Sbjct 23181 GTTGATACAGTTTTAAGT---ATCAATAGCATTGCTGACGTGTATCCAGACTTT-AGACA 23126
Query 30876 GGAAAGCAAGGCTCCAACCTTTGCTCTCACCTATCAGGGTACATTCCATACTCTCATGGT 30935
|| || || || || ||||| || |||||||| ||||| | || || || ||||
Sbjct 23125 AGATTCTAAAGCACCTACTTTTGCACTTACCTATCAAGGTACTTATCACACACTGATGGC 23066
Query 30936 CAACTGTGGTTTCTCGAAAGAGAAAGCCCAAGACA-TCGAGAACAAGTACAAGAAAATGT 30994
|||||||| ||||| ||||||||| |||||||| | || | | ||| | || | |
Sbjct 23065 TAACTGTGGCTTCTCTGAAGAGAAAG-CCAAGACAGTTGAACAGAGATACCATGAACTTT 23007
Query 30995 ACAAGGTCTCGATTGAGTTTGTGGAAAAGAAGCTCGAACAAGCTACTCGTGATGGCTACA 31054
| |||||| ||| | || | | ||| | | ||||| | | ||||| || |
Sbjct 23006 ATTGGGTCTCTGATGAATGGGTTAACGATAAGTTAGCTCAAGCCAGCAGAGATGGTTATA 22947
Query 31055 TCACTGTAGCATTCGGTCTCCGTGTTCGAACTCCCTTACTTGCACAGACTATCCTTGGAA 31114
|||||| |||||||| | | |||| ||||| ||| | | | | || ||||
Sbjct 22946 TCACTGGTGCATTCGGATTAAGGATTCGTACTCCATTAATCAAAAAAGTTGTCTGGGGAA 22887
Query 31115 CCAACAAGACACCCAAGGAAGCAGCAGCAGAAGGTAGAACAGCAGGGAATGCTATGGGTC 31174
||| || || || | |||||| ||| ||||| ||||| || || |||||| | ||||
Sbjct 22886 CCAGTAAAACTCCATATGAAGCAAAAGCTGAAGGCAGAACTGCTGGTAATGCTTTAGGTC 22827
Query 31175 AGTCATACTGTATGCTGAACTCCAGAGCAGCTTCTGAGTTCATGAAAAAGGTCAG--AGT 31232
| |||| ||| | ||||| | |||||||| ||||||||| || ||| | | |
Sbjct 22826 AATCATGGTGTTTACTGAATAACCGAGCAGCTAACGAGTTCATGGAACGAGTCTGGAATT 22767
Query 31233 GTCC--AAGCATAAGCTAGACATCAAACCATGTGCTCATATCCATGATGCTCAATACTAT 31290
||| | ||| || ||| ||||| ||||||||||| || ||||||||||| || |||
Sbjct 22766 CTCCATATGCAGAA-CTA---ATCAAGCCATGTGCTCAGATTCATGATGCTCAGTATTAT 22711
Query 31291 CTGGTTC 31297
|| ||||
Sbjct 22710 CTAGTTC 22704
Score = 87.8 bits (96), Expect = 8e-13
Identities = 122/169 (72%), Gaps = 4/169 (2%)
Strand=Plus/Minus
Query 29770 ACCTATCTGGCTACCAATAGCTGTGCTGGCAATGAGCTAGGTCTCAAAGCTCAAGCACAA 29829
|| ||||||||||||||| ||||| || |||||| |||| || ||||| || | ||
Sbjct 24197 ACGTATCTGGCTACCAATTCATGTGCAGGTAATGAGTTAGGGCTGAAAGCCCAGTCTCAT 24138
Query 29830 GAGTTTGCTGGGAACTATGCTGTCGAGGATATCCAAGACATCACTCAGATCGAACTAGCA 29889
||||||||||| |||||||| || ||||| ||||| ||| | || ||| ||
Sbjct 24137 GAGTTTGCTGGAAACTATGCACAGGAAGATATTGCTGACATTACTAAAAT--TCCTATCA 24080
Query 29890 A--AGCTCTTGGAATACAACCTCGTAGATGGTCTTTCCACTTGGTATGT 29936
| |||| |||| |||||| | || || | | ||||||||||||
Sbjct 24079 AAGAGCTTCTGGAGTACAACTTAGTTGACTGCTTAAGCACTTGGTATGT 24031
>seq12202
Length=11894
Score = 192 bits (212), Expect = 3e-44
Identities = 522/784 (67%), Gaps = 14/784 (2%)
Strand=Plus/Minus
Query 66129 ATGAATCCACCCTGTTGTCCGGTGACTTCGATACCGACACCTTGAGGTGAATACTCCTGT 66188
||||||||||||||||| || || ||||| ||||| || |||||| ||||| |
Sbjct 8533 ATGAATCCACCCTGTTGACCAGTAACTTCAATACCAACTGACTGAGGTTGGTACTCAACT 8474
Query 66189 GCAAAATTGAACAGATCGTTGATAGTT-TTGCCCATCTGTTGACGTTCGCACAGACCATC 66247
| | | || || || | | |||| ||| |||| |||||| || | ||||||
Sbjct 8473 ACTAGTCTAAAGAGGTCATCAA-AGTTCTTGTTCATCAATTGACGACGACAGATACCATC 8415
Query 66248 AACCCAAATCCAGTTCCCATC-CTTGTCATAGGCCCAAACAGAAATCACTGTGTAATCAG 66306
|||||| | ||| | |||| || | || | |||| |||||||| |||| || ||||
Sbjct 8414 AACCCAGAACCAATCACCATTGCTATTGATTG-CCCATACAGAAATAACTGAATAGTCAG 8356
Query 66307 CAGTTTGCTTGGAAGAAGTGGCAAAGTCAGTGGTGATGTAGAAGTTGTAG-TGCTTCCTA 66365
| | |||||| ||| || |||||||||||||| |||||||| | | | || |
Sbjct 8355 CTGATTGCTTCTCGCTAGTAGCGAAGTCAGTGGTGATATAGAAGTTAAACATACCTC-TG 8297
Query 66366 TT--GGACAAGATGTCCATCCGAGACTTCCAACCAATCTCATCTTGTTGAATCAGACGAG 66423
|| | | |||| | | || | ||| || ||| || | | || |
Sbjct 8296 TTCAGTAAAAGAGA--CTTACGCTTGTACCATTGGATATCAGATTCCAGTACAAGCCTCT 8239
Query 66424 ACTCATCTGAGGTAATCCGAAGCATGAGTTCCTGACGGAAAG-ACTTTTCTTTCCCTTCC 66482
||||| |||||||||| | ||| ||||||||| ||| | | || ||| |
Sbjct 8238 CTTCATCAGAGGTAATCCTCAACATCAGTTCCTGATTGAATGCAGCCACCTGTCCAGTAG 8179
Query 66483 ATCACAGCAGAATCATACAT-CTCTTTCACATAATCGTATGTGAAGCGATCTTCCCAAGC 66541
| |||||| ||||| ||||| || | || |||| |||||| |||||||||||
Sbjct 8178 CT-ACAGCAAGGTCATATTGGCTCTTA-ACGAAGTCATATGAGAAGCGGTCTTCCCAAGC 8121
Query 66542 TCCGCTAAATTCTTCACGCTCACAAGGAAACTCTTTGCAGACAGGCCAGACGTTCACTTG 66601
|| ||| ||||| | | ||||||| || | | || | || | ||||| || |
Sbjct 8120 ACCTACAAAGTCTTCTCTCGCACAAGGGAATTTCTCACAAATGGGGAATACGTTGACGTA 8061
Query 66602 CCAAGCACCAGACTCAATTGCCTGATACACAATGTCTTCTTTGTTGAACGGAGTTCCATT 66661
|||| |||| || || | ||| | ||| | ||| || | ||||| || || || ||| |
Sbjct 8060 CCAACCACCTGATTCCACTGCTTCATAAAGAATATCGTTCTTGTTAAAGGGTGTGCCACT 8001
Query 66662 CAGAATCATCTTGTGACGAGTTGGATCCAACGCATACTGAACACCTGAGTATACAGTATC 66721
| || ||||| |||||| || ||||| ||||| | ||||||| ||||||||||||
Sbjct 8000 GAAAACAATCTTTCTACGAGTAGGGTCCAAAGCATAATCAACACCTTTGTATACAGTATC 7941
Query 66722 GTTGATGGCTTCCATTGCAGTCGGTGATTTAGAATCAGCATCTGAGATCAAGTCGTCCAT 66781
|||||||| | ||| | | | ||||||| |||| |||| | | ||| ||||
Sbjct 7940 CTTGATGGCCTGCATAGTTGACTTAGATTTAGCATCATCATCACTAACGAGGTCATCCAA 7881
Query 66782 GACAGCCAGTACAGGACGACGATTGAAGATCTTCGTACCCCGGATACCTGATTTGGCACC 66841
||||||| |||||||| | |||||| || ||||| || | || | || |||||
Sbjct 7880 CACAGCCAAAACAGGACGTTTACCGAAGATTTTGGTACCACGTAAGCCAGTCTTAGCACC 7821
Query 66842 GAACATCTTGACGCCAAATTTACCACCATTTCTGTTGTGAAATTCCATGTAGTTTTCAGT 66901
||||| || || | ||| |||| || ||||||||||||| |||||
Sbjct 7820 AAACATACGAACACCTAGCTTATGCCCATCAGCATTAGTAAATTCCATGTAGGCATCAGT 7761
Query 66902 GAAT 66905
|||
Sbjct 7760 AAAT 7757
>seq8126
Length=2631
Score = 131 bits (144), Expect = 8e-26
Identities = 387/588 (66%), Gaps = 18/588 (3%)
Strand=Plus/Minus
Query 61154 GCTTTCTGTTCGTCAACTGAAGCAGTCGAAATA-TCAACTTTGAGATCGAAGTTTCCTTC 61212
|||||||| | || || |||||| |||||| | ||||| || || |||||||| |
Sbjct 603 GCTTTCTGGTTATCTGCTTCAGCAGTAGAAATACTTAACTTA-AGGTCAAAGTTTCCAGC 545
Query 61213 CAGTTCTGCACGAGAAACTTCCACAAACTCACGGTTTGTGACTCGGATGATTTCCTTTTC 61272
| ||| | | | |||| || || ||| || |||| ||| | | ||| | |||
Sbjct 544 TAATTCATCTCTACGAACTGATACGAAATCATCATTAGTGATTCGTACAACTTCTTCTTC 485
Query 61273 GCTCAAGAACTTACCGTTCATGGCAATCATTTTCATTCCGATGTCTTGAATACCTTTCGC 61332
||||||| | | ||||| | | | || || || || ||| |||| ||
Sbjct 484 AGATAAGAACTCAGCATTCATAGATACAAACTTATAGCCAATATCCACAATGCCTTGAGC 425
Query 61333 CAAACGACGAAGGATACTCATTTCACGTTGAGCAGCAGAATCCAAAGCACCACGAATACC 61392
||| | |||||| |||| | |||||||| || ||||| |||||| || |||||||||||
Sbjct 424 CAATCTACGAAGAATACCTAATTCACGTTTAGAAGCAGCATCCAATGCGCCACGAATACC 365
Query 61393 TGTAGCCACACGACCATAAGCATCTCCAGTGATACCCCCAGAGAACGACTTCACACCAGT 61452
| ||| ||| || |||| | | | ||||| ||||| ||||| || |||||
Sbjct 364 AGCAGCTACATCGCCTAAAGCTTGTGATGCAATACCTTGTGAGAATGACTTAACGCCAGT 305
Query 61453 CAGTGCTTCAGCTTCAGCATTCTGCCATTGAATCGTTTCATGAGCAGAACGAGGAATCTC 61512
|| | |||||||||| ||||| | |||||| | | | || || ||||||||||
Sbjct 304 AAGAGATTCAGCTTCATTGTTCTGATACTGAATCATCAGAGGCGCTGACTGAGGAATCTC 245
Query 61513 AGG----GTATTCCATCT-GACGGATGTTAGCTTTTGGATCACCATTTGGGTTGAACTCA 61567
||| ||| | ||| | ||| | || | |||| || | |||| |||||||||
Sbjct 244 AGGAGACGTA-TGCATGTAGAC--ACCTT--GTCTTGGGTCCACGTTTGCATTGAACTCA 190
Query 61568 AAGTCTTCACCATTGGTGAATCGACGCTTGT---TCACAGGATCAAGGAAACCTTTAGCA 61624
||||||| || || || ||| ||| |||| ||| | | ||||| |
Sbjct 189 TAGTCTTCGCCCTTATCAAACTTACGTCTGTTAGTCAC---ATCCAACATGTCTTTACGA 133
Query 61625 TAACCAGTCTGTGCGTTTGCAGATCGACCCATGAGATCAATTACACCACGAGTCACAGCA 61684
|||||| || | || ||| ||| ||| | |||||| | ||||||| |||
Sbjct 132 ATACCAGTTTGACCATTAGCACTACGAGCCAGAATATCAATCATGGCACGAGTAGTAGCT 73
Query 61685 CCAATGATACGCTGATTGTCTTGAAGCAGCGAAGCATCAGCTTCACCA 61732
||||| || ||| || |||| || | | | |||||| |||||||
Sbjct 72 CCAATAATCTTCTGGTTATCTTCCAGTAAAGCACCATCAGGTTCACCA 25
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 234477306594268
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |