Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq12921 129 4e-24 seq13246 98.7 8e-15 >seq12921 Length=52531 Score = 129 bits (142), Expect = 4e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 518162 TGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAA 518221 || || |||||||||||||| |||| || || ||||| |||||||| | ||||| | Sbjct 5442 TGTTTCTTATCAAGACCATAAGCAAGCGCTGCGGCAGTCGGTTCATTTACTATTCTGAGT 5501 Query 518222 ACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAA 518281 ||||| | || || ||| ||||||||||||| || ||||| | ||| || ||||| || Sbjct 5502 ACATTTAATCCGGCGATTTTTCCTGCATCTTTTGTTGCTTGACGTTGAGAGTCGTTGAAG 5561 Query 518282 TATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTT 518341 ||||| || || || || || ||||| ||||||| | |||| |||||| ||| | Sbjct 5562 TATGCTGGCACTGTTATCACAGCATCTTTTACTTCCTCTCCAAGATAAGCTTCTGCTGCC 5621 Query 518342 TGTTTCATTTT 518352 | |||||| || Sbjct 5622 TCTTTCATGTT 5632 Score = 109 bits (120), Expect = 4e-18 Identities = 249/371 (67%), Gaps = 18/371 (5%) Strand=Plus/Plus Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333 || ||||| ||||| | |||||||| ||||| || ||||| || || | ||||||| Sbjct 4563 ATTCCATTTGCATCTATGTCAAATGTTACTTCGATCTGAGGAACTCCACGAGGAGCAGGA 4622 Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 517393 || |||||||||||| |||| || || || || || | ||||||| |||| Sbjct 4623 GGTATCCCTTCCAAACTAAACTGACCAAGTAACTTGTTGTCAACCGCCAATTTTCTTTCA 4682 Query 517394 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 517453 || | | | || ||||| | ||||| |||||| ||||| ||| || ||| Sbjct 4683 CCTTGATGTACCTTAATTGTAACGGCTGTTTGGTTATCTTCTGCAGTTGAAAACAC-CTG 4741 Query 517454 -GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATA--CCACCT 517510 ||||||||| ||||| || || || | |||||| | ||| |||| || ||| Sbjct 4742 AGATTTTTTAGTGGGAATAGTAGTATTACGTTCAATA--AGTGGAGTAAATACTCCTCCT 4799 Query 517511 GCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTT 517570 ||||| | |||||||||||| ||||| ||||||| ||| | | || | || Sbjct 4800 AGAGTTTCAATACCAAGAGAAAGTGGAGTCACATCAAGTAGTAACACAT------CTCTT 4853 Query 517571 TCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 517630 ||||| ||| || || | || || | ||||| ||| ||| ||| ||||| Sbjct 4854 ACATCACCTTG------AATGATCCCCGCCTGTACTGCAGCTCCAATTGCTACAACTTCA 4907 Query 517631 TCAGGATTAAC 517641 |||||||| || Sbjct 4908 TCAGGATTTAC 4918 >seq13246 Length=2934203 Score = 98.7 bits (108), Expect = 8e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 322244 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 322303 ||||| ||||| || ||||| ||||| |||||||||| || |||| || || ||| Sbjct 801157 CCGTAAGCAAGCGCAGCTGCGGTTGGCTCATTAATTACACGTAGTACATTCAATCCGGCA 801098 Query 322304 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 322363 |||| | ||| ||| || || |||| |||| ||| |||||||| |||||||||||| Sbjct 801097 ATTTGACCAGCATCCTTTGTCGCCTGTCGTTGTGAGTCGTTAAAATAGGCTGGTACAGTA 801038 Query 322364 ATAACTGCTTTATT 322377 ||||| || || || Sbjct 801037 ATAACGGCATTCTT 801024 Score = 95.1 bits (104), Expect = 9e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 || || |||| ||||| || ||||| |||||||| | | | ||||| | || ||| Sbjct 801157 CCGTAAGCAAGCGCAGCTGCGGTTGGCTCATTAATTACACGTAGTACATTCAATCCGGCA 801098 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 ||| || ||||| || || || |||| |||||| ||||||||||| || || |||||| Sbjct 801097 ATTTGACCAGCATCCTTTGTCGCCTGTCGTTGTGAGTCGTTAAAATAGGCTGGTACAGTA 801038 Query 518297 ATAACGGCAT 518306 |||||||||| Sbjct 801037 ATAACGGCAT 801028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780164494368148