Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq13189 96.9 4e-15 seq13242 86.0 8e-12 seq13027 84.2 3e-11 >seq13189 Length=1149699 Score = 96.9 bits (106), Expect = 4e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 112901 TCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATG 112960 |||||| || || || |||||||||||||| || ||||| || || || ||||| || | Sbjct 402300 TCTTTTAATAGCGCCTATGCCAACAGCCTCGACGGCACAGATTTTAGGGAATAACGAGTC 402359 Query 112961 CTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGAT 113020 | |||||||||||||||| || ||||| ||||| | | | ||||| ||||| || Sbjct 402360 CATTGAACCCTACACGACTAATATCTACGTGAGACGCGTATTGTCTGGAGAATTTGTCAT 402419 Query 113021 TGTCAA 113026 |||||| Sbjct 402420 TGTCAA 402425 >seq13242 Length=2670346 Score = 86.0 bits (94), Expect = 8e-12 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 102093 TTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGG 102152 ||| | || ||| | || |||| ||| | |||||| || ||||||| |||| ||| Sbjct 1010066 TTTAATGCGATCGAGACGCTTCCTTGTGTGGGAAAGAAGGCCAATTGGGCATTGAACTGG 1010125 Query 102153 TTTGAT-ACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGG 102211 | || || | ||| | | ||| |||| || | |||| || ||| |||||||| Sbjct 1010126 ATCAATCACGAGAGCGC-TACATTTCCTGAACGTGTAATCGCGTTCGCGGCGGTTGAGGG 1010184 Query 102212 TATCTTCTTCTCTGGTTCCTTCTGC-GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGC 102270 |||||||||| || || ||| || || | ||||| ||||||||||| |||||| Sbjct 1010185 TATCTTCTTCAGCGGCAGTTT-TGCAGCGATCTTCTGGCTGAAGAAGCGAGGGGTCATGC 1010243 Query 102271 CAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGA 102310 |||| ||| ||| |||||| || ||||| || ||||| Sbjct 1010244 CAGGGCTCACCTTTAGCAACGAACTCATCTCGCGAGACGA 1010283 >seq13027 Length=117870 Score = 84.2 bits (92), Expect = 3e-11 Identities = 193/287 (67%), Gaps = 18/287 (6%) Strand=Plus/Plus Query 15972 TCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 16031 ||||| ||||||||||| || | ||| || | |||||||| | ||| ||||| | Sbjct 82972 TCAAAGCCATCCATCTCAACTAATAACTGATTTAATGTTTGTTCTCTTTCGTCATTACC- 83030 Query 16032 GGCATACCACCAGCAC---TGC---GTTGCTTTCCCACGGCATCAATCTCATCAATGAAG 16085 ||||||| || ||| | || | ||||| ||||| |||||||| || || Sbjct 83031 -----ACCACCAAGACCAATGCCACGATGTCTACCCACCGCATCTATCTCATCTATAAAA 83085 Query 16086 ACGATGCATGGTTGATTTTCGCGAGCGACTT---CAAAGAGATCCCGTACACGCTTGGCG 16142 | || || || ||||| | || ||| |||| | ||| || ||||| | || Sbjct 83086 ATTATACAAGGAGCATTTTT-CTTGC--CTTGATCAAACATATCACGAACACGGCTCGCA 83142 Query 16143 CCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTA 16202 || ||||||||||||||||| ||||| | | | ||| | ||| || |||||| Sbjct 83143 CCAACACCAACAAACATCTCAACAAAATCGGATCCAGAAATGCTAAAGAATGGCACATTA 83202 Query 16203 GATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 | ||| || ||||| || || || || | ||| ||||| || || || Sbjct 83203 GCTTCTCCTGCAATTGCACGAGCAAGTAAAGTTTTACCAGTTCCAGG 83249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620639527465760