Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq13163 143 6e-29 seq13175 102 2e-16 seq13245 100 6e-16 >seq13163 Length=1194233 Score = 143 bits (158), Expect = 6e-29 Identities = 145/189 (77%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| || | |||||| || ||||||||||| ||||| || ||||| || Sbjct 711584 TTCTGGATGTTGTAGTCTGAAAGAGTCCTGCCATCTTCGAGTTGCTTGCCGGCGAAAATC 711643 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 | || ||||| || || ||||| || |||||||| || ||||| ||| ||||| ||| Sbjct 711644 AAACGCTGTTGATCCGGGGGAATCCCCTCTTTGTCCTGGATTTTGGCCTTCACGTTTTCA 711703 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132 |||||||||||| ||| ||||| ||||| | || || || || | ||| |||||||| Sbjct 711704 ATGGTGTCCGAAGCTTCGACTTCCAGGGTGATGGTTTTGCCCGTTAGAGTCTTTACGAAG 711763 Query 195133 ACTTGCATT 195141 | |||||| Sbjct 711764 ATCTGCATT 711772 >seq13175 Length=923006 Score = 102 bits (112), Expect = 2e-16 Identities = 116/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 194959 ATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCG 195017 |||| ||| ||| |||| || | || || ||||| ||||| || ||||| || |||| Sbjct 562007 ATATGGTAGTCGAACAAG-GTGCGTCCGTCCTCGAGTTGCTTGCCCGCGAATATCAGTCT 562065 Query 195018 TTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGT 195077 ||| || | ||||||||||| ||||||||||||||||| ||| |||||||| || || Sbjct 562066 TTGCTGATTGGGAGGAATGCCCTCTTTGTCTTGAATTTTAGCCTTCACGTTCTCGATCGT 562125 Query 195078 GTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||||||| || || || || || | ||| || Sbjct 562126 GTCCGAAGCCTCGACCTCCAGCGTGATCGTTTT 562158 >seq13245 Length=2836997 Score = 100 bits (110), Expect = 6e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 |||| || || ||||| |||| || || | ||||| || ||||| || || ||||||| Sbjct 675195 CTTTCTGTATGTTGTAGTCGGAGAGTGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGA 675136 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCT 195070 | || || || || || || || ||||| || ||||| || || || ||||||||||| Sbjct 675135 TGAGCCGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCT 675076 Query 195071 CAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGA 195130 | || || || || ||||| || ||||| | ||||| || || | || || |||| Sbjct 675075 CGATAGTATCGGACGCCTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 675016 Query 195131 ACACTTGCAT 195140 | | ||||| Sbjct 675015 AGATCTGCAT 675006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109293134440886