Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq12921 167 2e-35 seq13163 120 2e-21 seq13246 114 1e-19 >seq12921 Length=52531 Score = 167 bits (184), Expect = 2e-35 Identities = 205/280 (73%), Gaps = 0/280 (0%) Strand=Plus/Minus Query 552295 TACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTA 552354 |||| | ||||| ||||| || ||||||||| | ||||| | ||||| | | ||| Sbjct 4842 TACTACTTGATGTGACTCCACTTTCTCTTGGTATTGAAACTCTAGGAGGAGTATTTACTC 4783 Query 552355 ATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATT 552414 ||||| || | |||||||||||||| ||||||||||| || ||||| || Sbjct 4782 CACTTATTGAACGTAATACTACTATTCCCACTAAAAAATCTCAGGTGTTTTCAACTGCAG 4723 Query 552415 CAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAG 552474 |||||| ||||| || ||||||||| | | | |||| ||||||||||| | | Sbjct 4722 AAGATAACCAAACAGCCGTTACAATTAAGGTACATCAAGGTGAAAGAAAATTGGCGGTTG 4663 Query 552475 ATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTAC 552534 | || || ||||||| |||| ||| ||||| || |||||||||||||||||||| | Sbjct 4662 ACAACAAGTTACTTGGTCAGTTTAGTTTGGAAGGGATACCTCCTGCTCCTCGTGGAGTTC 4603 Query 552535 CGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAAT 552574 | || || ||||| || || || || ||||| |||||||| Sbjct 4602 CTCAGATCGAAGTAACATTTGACATAGATGCAAATGGAAT 4563 Score = 122 bits (134), Expect = 7e-22 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 550352 AAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACT 550411 || |||||| | |||| |||| | |||| | ||||| | ||||| || ||||| Sbjct 5632 AACATGAAAGAGGCAGCAGAAGCTTATCTTGGAGAGGAAGTAAAAGATGCTGTGATAACA 5573 Query 550412 GTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCT 550471 || |||||||| || || ||||| ||||||||||| || |||||||| ||| || || Sbjct 5572 GTGCCAGCATACTTCAACGACTCTCAACGTCAAGCAACAAAAGATGCAGGAAAAATCGCC 5513 Query 550472 GGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTT 550531 ||| | ||||| || | || | |||||||| ||||| || || ||||| ||||| ||| Sbjct 5512 GGATTAAATGTACTCAGAATAGTAAATGAACCGACTGCCGCAGCGCTTGCTTATGGTCTT 5453 Query 550532 GATAA 550536 ||||| Sbjct 5452 GATAA 5448 >seq13163 Length=1194233 Score = 120 bits (132), Expect = 2e-21 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 |||||| || || |||||||| ||| ||| || || ||||| || | || ||||| Sbjct 711781 GAGACGCAGGACCAGATGAAGCGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCT 711840 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 ||||| ||||| || || ||||| || || | ||||||||| |||||||| ||||| Sbjct 711841 GCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGGAGGAATACCTTC 711900 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAG 563434 ||||||||| || || ||| || ||||| || |||| | ||| ||||| | Sbjct 711901 TTTATCTTGGATCTTAGCTTTGACATTTTCAATAGTGTCAGAAGCTTCTAC-CTCGAGGG 711959 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | | ||||| ||||| |||||||| || || |||||||| Sbjct 711960 TGATGGTTTTTCCAGTGAGAGTTTTCACAAAGATTTGCAT 711999 >seq13246 Length=2934203 Score = 114 bits (126), Expect = 1e-19 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 550349 ATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGATGCAGTAAT 550407 ||||||||||| |||| || |||| | ||| || ||| | | |||| || || Sbjct 800979 ATGAAAATGAAGGAAACCGCTGCGGCTTAT-TTGAACACTTCAGTGAAGAATGCCGTTAT 801037 Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTAT 550467 ||||||||||| |||||||| ||||||||||| || || || || |||||||| | || Sbjct 801038 TACTGTACCAGCCTATTTTAACGACTCACAACGACAGGCGACAAAGGATGCTGGTCAAAT 801097 Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 ||| ||| | ||||| || ||| | || ||||| || || || ||||| ||||| || || Sbjct 801098 TGCCGGATTGAATGTACTACGTGTAATTAATGAGCCAACCGCAGCTGCGCTTGCTTACGG 801157 Query 550528 ACTTGATAAACA 550539 | || ||||| Sbjct 801158 CATGGACAAACA 801169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028594857166420