Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq12921 145 5e-29 seq13163 86.0 4e-11 >seq12921 Length=52531 Score = 145 bits (160), Expect = 5e-29 Identities = 281/414 (68%), Gaps = 13/414 (3%) Strand=Plus/Minus Query 475790 GTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGT 475849 |||||||||||||||| ||| ||| ||||||||| || || || | || | |||| Sbjct 4918 GTAAATCCTGATGAAGTTGTAGCAATTGGAGCTGCAGTACAGGCGGGGATCATTCAAGGT 4859 Query 475850 CAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGT 475909 || | ||| || | |||| |||| || ||||||||||| | ||| Sbjct 4858 ------GATG------TAAGAGATGTGTTACTACTTGATGTGACTCCACTTTCTCTTGGT 4811 Query 475910 CTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGC 475969 ||||||| | ||||| | | ||| |||||||| | |||||| |||| || Sbjct 4810 ATTGAAACTCTAGGAGGAGTATTTACTCCACTTATTGAACGTAATACTACTATTCCCACT 4751 Query 475970 AAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATC 476029 |||||||| | || ||||| ||| ||||| |||||| | || || || | | Sbjct 4750 AAAAAATCTCAGGTGTTTTCAACTGCAGAAGATAACCAAACAGCCGTTACAATTAAGGTA 4691 Query 476030 TTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAA 476089 | |||||||||||||||| | || || || |||||| |||| | | ||| Sbjct 4690 CATCAAGGTGAAAGAAAATTGGCGGTTGACAACAAGTTACTTGGTCAGTTTAGTTTGGAA 4631 Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 || || ||||||||||| | ||||||||||| || ||||| || ||||| || |||||| Sbjct 4630 GGGATACCTCCTGCTCCTCGTGGAGTTCCTCAGATCGAAGTAACATTTGACATAGATGCA 4571 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAAATCTAGT-AACAAGAGTAAAAA 476202 ||||| || | ||| |||| |||||| ||| | | ||||| ||||| Sbjct 4570 AATGGAATAGCACACGTTTCTGCAAAAGATAAAGCTACTGGAAAAGAGCAAAAA 4517 Score = 143 bits (158), Expect = 2e-28 Identities = 130/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 474713 TATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCT 474772 ||||||||| | ||||||| ||||| || || || || |||||||| || || || ||| Sbjct 5608 TATCTTGGAGAGGAAGTAAAAGATGCTGTGATAACAGTGCCAGCATACTTCAACGACTCT 5549 Query 474773 CAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATT 474832 |||||||||||||| |||||||| |||| ||| || || | ||||| | | || | Sbjct 5548 CAACGTCAAGCAACAAAAGATGCAGGAAAAATCGCCGGATTAAATGTACTCAGAATAGTA 5489 Query 474833 AATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 |||||||| || || || || ||||||||||||||||||||||| Sbjct 5488 AATGAACCGACTGCCGCAGCGCTTGCTTATGGTCTTGATAAGAA 5445 >seq13163 Length=1194233 Score = 86.0 bits (94), Expect = 4e-11 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 480593 ATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTG 480652 |||||| || | ||||||||| ||||| || || || ||||| || || | ||| || Sbjct 709874 ATTATAGTCGGAAAGAGTTCTGCCGTCTTCCAGCTGTTTGCCAGCGAAGATTAAACGCTG 709933 Query 480653 TTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 ||||| ||||||||||| || ||||| || || || || || ||| || || || Sbjct 709934 CTGATCCGGAGGAATTCCCTCTTTGTCCTGGATTTTGGCCTTCACGTTTTCTATGGTGTC 709993 Query 480713 AGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | ||| ||||| || ||||| || ||||||||||| ||||| || || Sbjct 709994 GGAAGCTTCGACTTCGAGGGTGATGGTTTTGCCCGTGAGAGTCTTTACGAAGATCTG 710050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267610500052184