Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq13163 116 5e-21 seq13242 87.8 3e-12 >seq13163 Length=1194233 Score = 116 bits (128), Expect = 5e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || |||||||| ||| | ||||| | ||||||||||| || || | || || |||| | Sbjct 712002 AACATGCAAATCTTTGTGAAAACTCTCACTGGAAAAACCATCACCCTCGAGGTAGAAGCT 711943 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||| | |||| ||| || ||| ||| || |||||||||||||| || ||||| || Sbjct 711942 TCTGACACTATTGAAAATGTCAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCGGAT 711883 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || ||| | |||| | ||| || ||||| || ||||| |||||| | || || || Sbjct 711882 CAGCAACGTCTGATCTTTGCTGGCAAGCAACTGGAAGACGGCAGAACCCTTTCCGACTAC 711823 Query 156000 AATATATCCAAAGAGGCGACGCTTCAT 156026 || || || || | ||||||||| Sbjct 711822 AACATCCAGAAGGAATCTACGCTTCAT 711796 >seq13242 Length=2670346 Score = 87.8 bits (96), Expect = 3e-12 Identities = 118/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 18428 ATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGA 18487 |||||||| || || | ||||||||||||||||||||| ||| | || || || || || Sbjct 1009858 ATATAAGTTTCAATGAGCAAAGAATACATTTCAGAATGGATGTTCTCTATCGCGATTTGG 1009799 Query 18488 AAACTATAAAACGATCTAGCCTCGG-GATATTGAATCTCGCTATAAAATCTTTCTACCAA 18546 || | || || | | || |||| ||| || | ||| | ||||| || | | Sbjct 1009798 AAGCCGTAGAAACAACGTGCTTCGGCGAT-TTTCACCTCCTGACTGAATCTCTCAATTAG 1009740 Query 18547 ATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAA 18588 |||||||||||| |||||||| | || ||||| |||||||| Sbjct 1009739 ATTCTCATTAACGATACCGTCGGAAGCGGCGAAGAATGCCAA 1009698 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 18180 CTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCtttttt 18239 |||| |||| || || | |||||| ||||| || | ||| ||||| | |||| || | Sbjct 1010285 CTTCGTCTCGCGAGATGAGTTCGTTGCTAAAGGTGAGCCCTGGCATGACCCCTCGCTTCT 1010226 Query 18240 ttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGCACGCGAACG 18299 | ||||| || |||| ||| ||||| | ||||| ||||||||||| |||||||| Sbjct 1010225 TCAGCCAGAAGATCGCTGCAAAACTGCCGCTGAAGAAGATACCCTCAACCGCCGCGAACG 1010166 Query 18300 CTATTAATCTTTCAGCAAA 18318 | |||| | ||||| ||| Sbjct 1010165 CGATTACACGTTCAGGAAA 1010147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731750710512800