Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq13229 131 5e-25 seq13170 100 8e-16 seq12970 84.2 6e-11 >seq13229 Length=2253397 Score = 131 bits (144), Expect = 5e-25 Identities = 205/291 (70%), Gaps = 2/291 (1%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| || |||||||||||||| ||||| || | ||| || || || ||| Sbjct 2239371 TCCATAGCCTTTATCAAACGACGCTGAATGTAACCGGTCTCGGCTGTCTTCACGGCGGTA 2239312 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCC 302693 || || ||||| ||||||||||||| || |||||| | | |||| ||| ||| || || Sbjct 2239311 TCGATAAGACCCTCACGACCACCCATCGCGTGGAAGTAGAACTCTGACGG-CGTGAGACC 2239253 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAA 302753 | | | | ||| |||| || ||||| || | ||| ||| | |||| |||| | || Sbjct 2239252 GGCTAGATACGAGTTCTCGACAAAACCGCGAGACTCTGGCCCGTAGTCGTCCTTGATGAA 2239193 Query 302754 GTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTG 302813 || ||||| || || || |||| | || || ||||| || || ||||||||||| Sbjct 2239192 ATGAGGCAGCGTTCTCTTACGGAAGCCAAAGGGTATTCGCTTACCCTCGACGTTCTGCTG 2239133 Query 302814 TCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 |||| || | || | ||| || || || | | |||||||||||| Sbjct 2239132 GCCCACACAAGCGATGACCTGAGAGATGTTGATGTTGGAGCCCTTGGAGCC 2239082 >seq13170 Length=905968 Score = 100 bits (110), Expect = 8e-16 Identities = 149/207 (72%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 60142 TGTGAAAATATACCTCTCGGAT--GCTGCGTCCTTGCCACCCATAAGACGGGTTCCAAAT 60199 ||||||||| || ||||||| || || ||||| || || |||| | || || || Sbjct 516209 TGTGAAAATGTA--TCTCGGACTGGCAGCATCCTTTCCGCCAGTAAGTCTTGTACCGAAC 516152 Query 60200 TGTCCGTTTGGCTGGAATAGATTAATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCA 60259 || ||||| ||||| ||||||||||||||||| ||| |||||||| || |||||| | Sbjct 516151 TGACCGTTAGGCTGCAATAGATTAATGTTGTTGCTGCCCACGAAATTCTGTGCGAGATTA 516092 Query 60260 ACAATAG-CACCATTTAAACTGGCTTCACCGTGATGATATCCAGAATGTTCTGAAACATA 60318 | ||| | | ||| | | | |||||| ||||| || | |||||||| | || | Sbjct 516091 ATAATCGTCGCCA-TCAGGGACGTTTCACCATGATGGTAAGCTGAATGTTCGGCGACCGA 516033 Query 60319 TCCACTGAATTGTGCGACTTTAATTTC 60345 ||| ||||| |||||||| | ||| Sbjct 516032 TCCCGCCAATTGCGCGACTTTCACTTC 516006 >seq12970 Length=76075 Score = 84.2 bits (92), Expect = 6e-11 Identities = 170/249 (68%), Gaps = 10/249 (4%) Strand=Plus/Plus Query 302574 TTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGT 302633 ||||||| ||| || |||||||||||||| ||||| || | ||| || || || || Sbjct 68766 TTCCATAGCCTTTATGAAACGACGCTGAATGTAACCGGTCTCGGCTGTCTTCACGGCGGT 68825 Query 302634 ATCAATTAGA-----CCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT 302688 ||| || ||| || ||||||||||||| ||||||||| | | |||| ||| Sbjct 68826 ATCGATAAGAAGATTCCCCCACGACCACCCATCGCATGGAAGTAGAACTCTGACGGCATG 68885 Query 302689 AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTG 302748 || || | | | ||| |||| || |||||||| | ||| ||| | ||| |||| Sbjct 68886 AGACCGGTTAGATACGAGTTCTCGACAAAACCACGAGACTCTGGCCCGTAGTCATCCTTG 68945 Query 302749 GTAAAGTGTGGCAGGGTCCTGTT-CTCATAGCCGTATGGGATACGCTTTCCATCAACGTT 302807 | || | ||||| || || || | | | ||| | | || ||||| || | |||| Sbjct 68946 ATGAAATCAGGCAGCGTTCTCTTACGGAGA-CCGAAGAGTATTCGCTTACCCT---CGTT 69001 Query 302808 CTGCTGTCC 302816 |||||| || Sbjct 69002 CTGCTGGCC 69010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471567585103946