Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_021540.1 Length=69278 Score E Sequences producing significant alignments: (Bits) Value seq12202 203 1e-47 seq7953 154 7e-33 seq8126 150 8e-32 seq9795 149 3e-31 >seq12202 Length=11894 Score = 203 bits (224), Expect = 1e-47 Identities = 657/990 (66%), Gaps = 50/990 (5%) Strand=Plus/Minus Query 60565 GGTTTCCAAATCTTCATTAAACTCAACATAGAAATAGTATCTATAAAGTCATCATGTTTA 60624 || ||||||| ||||| | ||||||| ||| ||||| |||||||| ||||| || Sbjct 8827 GGCTTCCAAACCTTCAGACATGACAACATACTAATCGTATCAATAAAGTCGTCATGCTTT 8768 Query 60625 GATTTAAAACCA-CTACGTGAAACCAATGATAATTCATTATGAGCTTCTACCATTGCAGG 60683 |||||||| || |||| | | ||||| | |||| |||||| | ||| Sbjct 8767 GATTTAAAGCCTTCTACA-GTAGCCAATCGAAGCTCATCCATAGCTTCCAACATAATCTT 8709 Query 60684 ATGTTCAGACATATCTTCAGGGAAGTATATCATTCTTTGTTTGAACCAAGGTAATAC--A 60741 | || || ||||||||||| | | | | | |||||||||||||||||| | Sbjct 8708 CTCATCCTTCAGTTCTTCAGGGAAAAAGAACTTACCAGCTTTGAACCAAGGTAATACTGA 8649 Query 60742 GTTAAGAATCTAGTGAACTTCTGGTTCGTAGGTCTTATACCCGGTTTATTATTGTTACCT 60801 ||| |||||| | ||| | | | ||||||| ||||| ||||| |||||||| ||| Sbjct 8648 GTT--GAATCTCACCATCTTATTGGTATTAGGTCTGATACCTGGTTTGTTATTGTTTCCT 8591 Query 60802 TCTGAAGCAATATTAAAGAAGATATTCTTATCCATCATCATAG--ATTTGATAAGAGATA 60859 || ||||||| ||||| |||| ||| | | ||||||| | | | | | || ||| | Sbjct 8590 TCAGAAGCAAAGTTAAACCAGATGTTCCTGTTCATCATC-TCGTCACGTAACAA-AGAGA 8533 Query 60860 CAAACCCACCCTGTTGACCGGTAACCTCTATACCTACATCAAT-TGGTT--TATATATCT 60916 || |||||||||||||| ||||| || ||||| || | | | |||| || | || Sbjct 8532 TGAATCCACCCTGTTGACCAGTAACTTCAATACCAAC-TGACTGAGGTTGGTACTCAACT 8474 Query 60917 GAACCAACCTAAATAAATCTTCAATAGTTACATCT--ATGGTTTGTCTCTTACAAATACC 60974 || | ||||| | || |||| |||| | | | || ||| | ||| ||||| Sbjct 8473 --ACTAGTCTAAAGAGGTCATCAA-AGTT-CTTGTTCATCAATTGACGACGACAGATACC 8418 Query 60975 GTCAATCCAATAGAGATACCCTTTATTATTTACTGCCCATACAGATATCACACTAAAGTC 61034 |||| ||| | || || || |||| | |||||||||||| || || | |||| Sbjct 8417 ATCAACCCAGAACCAATCACCATTGCTATTGATTGCCCATACAGAAATAACTGAATAGTC 8358 Query 61035 AGCTTGTTTCTTCTCGCTAGTAGCAAAGTCAGTAGTAATGTAAATATTAAAGTTACCTAA 61094 |||| || ||||||||||||||| |||||||| || || || | ||||| ||||| Sbjct 8357 AGCTGATTGCTTCTCGCTAGTAGCGAAGTCAGTGGTGATATAGAAGTTAAACATACCTCT 8298 Query 61095 GTTTCGGATTACATCCGACCTTAC----AAAGTATTGGATATCACCTTGCTCAATTAGCT 61150 ||| | || | || ||||| | ||||||||||| || | | ||| Sbjct 8297 GTT---CAGTAAAAGAGA-CTTACGCTTGTACCATTGGATATCAGATTCCAGTACAAGCC 8242 Query 61151 TATCTTCTTCAGACATAATACGTAACATTAACTCTTGGTTAAATGCATCCAGTTTATGCA 61210 | ||||| ||||| |||| | ||||| | || || || |||||| ||| | | || Sbjct 8241 TCTCTTCATCAGAGGTAATCCTCAACATCAGTTCCTGATTGAATGCAGCCA-CCTGTCCA 8183 Query 61211 GTCCTTTCATC-TTGTTATAGAGTTTTAGAATAGAATCATAATCAAACCGATCTTCCCAA 61269 || | || | || ||| | | || | ||||| || || ||||||||| Sbjct 8182 GTAGCTACAGCAAGGTCATATTGGCTCTTAACGAAGTCATATGAGAAGCGGTCTTCCCAA 8123 Query 61270 CTACCTCTAAACTCTTCTCTACTACAAGGAAATGTTTCACATACTGGATATACGTTTACT 61329 |||| ||| |||||||| |||||| ||| | ||||| | || ||||||| || Sbjct 8122 GCACCTACAAAGTCTTCTCTCGCACAAGGGAATTTCTCACAAATGGGGAATACGTTGACG 8063 Query 61330 GCCCAAGCCCCGGATTCAACTGCTTTATACA----ATGGGTCACTTGCATTAAATGGCGT 61385 |||| | || ||||| ||||||| ||| | || | | |||| ||||| || || Sbjct 8062 TACCAACCACCTGATTCCACTGCTTCATAAAGAATATCGTT--CTTG--TTAAAGGGTGT 8007 Query 61386 AC--CTGACCAGATTACTTTTCTCTTGTTTGGGTGCAGAGCAAATTCAATAGCATTGTAT 61443 | |||| | | | ||||| | |||| || |||| | |||| | | |||||| Sbjct 8006 GCCACTGA--AAACAATCTTTCTACGAGTAGGGTCCAAAGCATAATCAACACCTTTGTAT 7949 Query 61444 ACGGTCTCTTCAATAGCTT---TAATT-ACTGTTGGTGAACGTGCATCTTTATCACTAAC 61499 || || || | || || | || || ||| | | | | ||||| | ||||||||| Sbjct 7948 ACAGTATCCTTGATGGCCTGCATAGTTGACT-TAGATTTA---GCATCATCATCACTAAC 7893 Query 61500 CAAGTCATCCAATAAAGCTAATACTGGTCG 61529 | ||||||||| | ||| || || || || Sbjct 7892 GAGGTCATCCAACACAGCCAAAACAGGACG 7863 >seq7953 Length=2551 Score = 154 bits (170), Expect = 7e-33 Identities = 215/296 (73%), Gaps = 8/296 (3%) Strand=Plus/Minus Query 55426 AATAACTGTACCTTCATTAACAGCAGTACGAACCATAGTATCAATTAACTTAACCTTATC 55485 ||| || ||||||||||| |||||||||||||| | |||||| || |||||||| Sbjct 2033 AATCACAGTACCTTCATTGACAGCAGTACGAACGTAATCATCAATGAAACGTACCTTATC 1974 Query 55486 TAATTGGTTATTAAATTGATAATTGAGAA-TAGCTTCATTCTGTCTAGCTGCTTCTCTAT 55544 | | ||||||| |||||||| || | || || ||||| |||| |||| ||||| Sbjct 1973 AATCTTAATATTAAACTGATAATTAAGTACTAACTGG-TTCTGAATAGCAGCTTGTCTAT 1915 Query 55545 CTTGCCAAGTTTTAGGTGCAATACTAAAAATATTTTCATC---ATTCAGAAATGGTTCAC 55601 ||| ||| || || || ||| | || | || |||| | ||| ||||||||| Sbjct 1914 CTTCCCATGTAACTGGAGC--TACAGAGAACAATT-CATCTGTACTCAAGAATGGTTCAG 1858 Query 55602 TTAAAGCTGAATATCTCCACTCTGCTTGCTTACGGATAAGCTTAGGTTGTACAGAACTTC 55661 | | |||||| |||||||| || ||||||||||| |||||| |||||||||| ||| | Sbjct 1857 TAAGAGCTGAGTATCTCCATTCAGCTTGCTTACGAATAAGCATAGGTTGTACTGAAGACC 1798 Query 55662 TACCTACTTGTTGCTTAGGTTTATAAGCACCAGTTACATTTAACTGAGCCAACCAA 55717 |||| | | |||||||||| | |||||| ||||||| | | | |||||| Sbjct 1797 TACCCGGTAACTTCTTAGGTTTAGCGGAACCAGTAACATTTAGGTTATCTAACCAA 1742 >seq8126 Length=2631 Score = 150 bits (166), Expect = 8e-32 Identities = 256/366 (70%), Gaps = 4/366 (1%) Strand=Plus/Minus Query 54028 TTGTGCTTGTGGTGATGGTTCAGGATTATATTTACTAATCATCTTAGATAAATCTGGCAT 54087 |||||| |||| |||| ||| | |||||| ||| |||| ||| || ||||| Sbjct 757 TTGTGCGAGTGGGTCAGGTTGAGGCTGATATTTCTCAATTCGTTTAGCTAAGTCAGGCAT 698 Query 54088 ACCACGTAGCTTAGCAATTTCACCCAATATAAGTTTTGTCATATCAAATGGCAAGCTTTG 54147 | | || |||||| |||| |||| | | | ||| || ||||||| || | Sbjct 697 ATTTCTCAGTCGAGCAATATCACTTAATACCATCTGAGACATTTCGAATGGCAGACTATT 638 Query 54148 ACCCATAGTTTGAAGCATAAAACTAAGTTCTTGAGCTTTAATTGCATCAGTTTCTGCATT 54207 ||||||||| |||||||| || | ||||| ||||| ||| | ||| ||| | Sbjct 637 ACCCATAGTCTGAAGCATGAATGCCAACTCTTGTGCTTTCTGGTTATCTGCTTCAGCAGT 578 Query 54208 AGAAATACTTAATTTAATATCAAATGAACCAACTAAGTTATCTCTGTTAATCTG-CACAA 54266 |||||||||||| |||| ||||| ||| |||| | |||||| || ||| || | Sbjct 577 AGAAATACTTAACTTAAGGTCAAAGTTTCCAGCTAATTCATCTCTACGAA-CTGATACGA 519 Query 54267 ACTCTTCATCAGTGATACGAATTACTTCTTCATCTGATAACCAAACAGAATTCATAGCTA 54326 | || |||| |||||| || | |||||||| || ||||| | ||| |||||||| || Sbjct 518 AATCATCATTAGTGATTCGTACAACTTCTTCTTCAGATAAGAACTCAGCATTCATAGATA 459 Query 54327 AAATCTTCTTAGCTACT-TCAGTTAATCCATTAGCTAATCTACGAAGAATACCTAATTCA 54385 || ||| |||| | | || | || | ||| |||||||||||||||||||||||| Sbjct 458 CAAACTT-ATAGCCAATATCCACAATGCCTTGAGCCAATCTACGAAGAATACCTAATTCA 400 Query 54386 CGTTTA 54391 |||||| Sbjct 399 CGTTTA 394 >seq9795 Length=3651 Score = 149 bits (164), Expect = 3e-31 Identities = 501/759 (66%), Gaps = 52/759 (7%) Strand=Plus/Plus Query 51373 GCATCTCAGGTACAACAATGATACGGAAACCGGCAATAGAACCAATCTCACCACGTAGTA 51432 |||||| ||| ||||| ||||| |||||| || ||||||||||| ||||| | || | Sbjct 2916 GCATCTTAGGAACAACGATGATGCGGAAAGAAGCGATAGAACCAATTTCACCTTGCAGGA 2975 Query 51433 CTTGCGTACCAGCAGCAGCATACTTCTCTACTGGAATAAACACAGGATTACCAGCAGCAT 51492 ||||||||| |||| |||| || || || || || | | ||| || | | Sbjct 2976 TA---GTACCAGCATCAGCGTACTGCTGAACCGGGATGAAAGCTGCATTGTCAAACGGGT 3032 Query 51493 CTTTCATGTTACGCATTTGCATC---TCTAATGGATAACCAACATAGAGAGCATAACCTG 51549 ||||||| ||||||| ||||| || | | | |||||| || |||||| | | Sbjct 3033 CTTTCATCTTACGCA---GCATCAGTTCCAGTTCAGAACCAATGTACAGAGCACGAGC-- 3087 Query 51550 AACC--AATGATTACTGAATCAATCTTACCAGTGCCTTTAGATGCCATTAGACGGT-TAG 51606 | || ||| | | ||||||| ||| | || | || || | | | ||| Sbjct 3088 ACCCGGAATAACACGAGTATCAATCATACGCGAACCAGCA-ATCAGCTTGGTCTGCATAG 3146 Query 51607 GTGCAC-GGTTCTCTTTAAGAGTTAGCGCTAGACGTTGTA----GATCTTTGTAAGTAAC 51661 | ||| |||| || || ||||| | || | | || || | | || ||||| Sbjct 3147 GA-CACAGGTTGTCATTCAGAGTGA----TACCCATCTTAACCAGACCGTCATAGGTAAC 3201 Query 51662 TACAGAAGCATTTGAACCACCTTCAGCAGTAAA---TGCAGTTAGACTTA-CAGCACCAC 51717 ||||| |||| | ||||||| |||| | |||| ||||| || ||||||| Sbjct 3202 TACAGTAGCAGT------ACCTTCACCAGTCATATCTGCA-TTAGAGGTAGCAGCACCCG 3254 Query 51718 CAGTAAAGATTTCTACACCAGCAGCTTTAATCAAGTCGATACCAATCATATCTTCTTGGA 51777 | ||| || | ||||||||| | || | || ||| || | | || || || Sbjct 3255 GA-TAACGAA--CAACACCAGCACCATTCAGCAGGTCAATCTGCAACTGGTCCTCAGTGA 3311 Query 51778 TTTCCATTGCACCACGCATAGATTCTTTCATCAGGTGACGTAGCAATG-CTGGGTCATCA 51836 |||| | ||||| | || ||| | |||||||| | || | | || |||| | Sbjct 3312 TTTCGTTAGCACCTTTAACAGCTTCCTGAATCAGGTG-CATATCCAGCTCTTCGTCAGTA 3370 Query 51837 TCAAAGTGTAGAGACTCTTTGGTAAACTCAGAGAAGAAACCAAGACGATATGCAGTACCT 51896 ||||| | | | || | || ||||| |||||||||| | | ||| ||| Sbjct 3371 TCAAAATCCATTGCTTCCTGAGTCCACTCATAGAAGAAACCGAATTTCTTGATAGTGCCT 3430 Query 51897 TCTAGTTCTAGACGAGTAAAACCAACACGGTTTACACGGCCACCAATCTCAGTAAGAGTA 51956 | || | | ||| || |||||||| ||||| ||||| |||||| ||||||| |||| Sbjct 3431 TGCAGCTGAATACGGGTGAAACCAACGCGGTTAACACGACCACCATTCTCAGTCAGAGCT 3490 Query 51957 GGTAGTTTACCTTCAATGATACCAATGTCTTTACTTGAGCCATATAGGTTACCAGAACCA 52016 || |||||| | ||| ||||||||||||| || || ||||| |||||||| | Sbjct 3491 GGCAGTTTAGATGGGATGGTACCAATGTCTTTGCTAGAACCATACAGGTTACC---GTTA 3547 Query 52017 GCAGTAGTAGAAGCTACACCAGCAGCATTAATACCTTGTGTTGAT-ACGTTACGATCATC 52075 ||| | |||| |||||||||||| ||||||||| || | | |||||||| ||||| Sbjct 3548 GCAATGGTAG------CACCAGCAGCATCAATACCTTG-GTCGTTGACGTTACGGTCATC 3600 Query 52076 CAACAGAGGCATATAGTGATGTTTCTTAATCTTCTTACC 52114 || ||| || || ||||||| |||||| ||||||| Sbjct 3601 CAGCAGTGGGATGTAGTGATACAGCTTAATGGTCTTACC 3639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 221528999144182