Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq12944 141 1e-27 seq13230 120 4e-21 seq13242 118 1e-20 seq13229 89.7 6e-12 >seq12944 Length=62557 Score = 141 bits (156), Expect = 1e-27 Identities = 152/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| |||||| ||| || || | |||||| ||||||||||| |||| ||||||| Sbjct 21311 GCCAGCTCGCCGGGCAGGAGAAGCCTCACGGCAGTCTGGATCTCCCGCGACGTGATCGTG 21252 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 ||||||||| |||| |||| || ||||||| ||||||| |||| | |||| Sbjct 21251 GAGCGCTTGTTGTAGTGGGCCAAGCGAGACGCCTCGGCCGCGATGCGCTCGAAGACGTCG 21192 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 ||||| || |||||||| ||||| |||| ||||||| || ||| ||||| ||| Sbjct 21191 TTGACGAAGCTGTTCATGATGCTCATCGCCTTGCTGGAGATCCCGGTGTCCGGGTGGACC 21132 Query 1254528 TGCTTGAGCACCTTGTAGATG 1254548 ||||| | ||||||||||||| Sbjct 21131 TGCTTCAACACCTTGTAGATG 21111 >seq13230 Length=2258499 Score = 120 bits (132), Expect = 4e-21 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | || || ||||||||||||||||| || | || Sbjct 486202 GCTTGGCCAGCTCGCCGGGCAGCAGAAGTCGGACGGCGGTCTGGATCTCCCGGGACGTGA 486261 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 |||| ||| ||||| |||| |||| ||| ||||||| | ||||||| |||| | Sbjct 486262 TCGTCGAGCGTTTGTTGTAGTGAGCCAAACGCGACGCCTCGGCGGCGATGCGCTCGAAGA 486321 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||||| ||||| | ||| | ||| ||||||| || ||| |||| Sbjct 486322 CGTCGTTGACAAAGCTATTCATTATGCTCATAGCTTTGCTGGAGATACCGGTGTCCGGGT 486381 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||| ||||| || || || |||||| Sbjct 486382 GCACTTGCTTCAGTACTTTATAGATG 486407 >seq13242 Length=2670346 Score = 118 bits (130), Expect = 1e-20 Identities = 160/218 (73%), Gaps = 5/218 (2%) Strand=Plus/Minus Query 869181 CTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCT 869240 ||||||| || ||| | |||||||||||||| ||| || ||||||| || ||||||| Sbjct 1010285 CTTCGTCTCGCGAGATGAGTTCGTTGCTAAAGGTGAGCCCTGGCATGACCCCTCGCTTCT 1010226 Query 869241 TGAGCCAAAAGATGGC-GCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 | ||||| ||||| || ||| |||||||| ||| ||||| ||||| || || || || Sbjct 1010225 TCAGCCAGAAGATCGCTGCA-AAACTGCCGCTGAAGAAGATACCCTCAACCGCCGCGAAC 1010167 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 |||| | || || | ||| ||| | || ||| | |||||||| |||| ||||| Sbjct 1010166 GCGATTACACGTTCAGGAAA--TGTAG-CGCTCTCGTGATTGATCCAGTTCAATGCCCAA 1010110 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGC 869397 | |||||| || | ||| | || | ||| ||||| || Sbjct 1010109 TTGGCCTTCTTTCCCACACAAGGAAGCGTCTCGATCGC 1010072 >seq13229 Length=2253397 Score = 89.7 bits (98), Expect = 6e-12 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 507077 TCGGGCAAGCCCACCAAGGGCCTCGTGGAGCGGTTCAAGGGCAAGGAGGGTAGGATCCGC 507136 ||||||||||| |||| || || ||| | ||||| |||||||||||||| || Sbjct 2237759 TCGGGCAAGCCTCTGAAGGCGATCAAGGCTCGGCTGAAGGGAAAGGAGGGTAGGATTCGT 2237818 Query 507137 GGCAATTGCATGGGCAAGCGCGTCAACTTTACCGCGCGCGCCGTCATCAGCCCCGACCCC 507196 || ||| ||||| || ||||| ||||| |||||||| | ||||||| || || ||| Sbjct 2237819 GGGAATCTGATGGGTAAACGCGTGGACTTTTCCGCGCGCACTGTCATCACGCCGGATCCC 2237878 Query 507197 GAGATCGACATTGACGAGGTGGGCGTGC--CCTATGAGATCGTCAAGACGCTCACCTTTC 507254 | | ||| || | || ||||||| | || | | || ||| | || || |||| Sbjct 2237879 AACCTGCGCATCGATCAAGTAGGCGTGCCGCGTAGTATAGCG-CAA-AATCTGACGTTTC 2237936 Query 507255 CCGAGCGCGTGACGCCCCTTACCAT 507279 ||||| |||||||||| | | ||| Sbjct 2237937 CCGAGATCGTGACGCCCTTCAACAT 2237961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106051186432786