Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq12944 165 1e-34 seq13230 149 1e-29 seq13181 104 4e-16 seq13242 102 1e-15 >seq12944 Length=62557 Score = 165 bits (182), Expect = 1e-34 Identities = 181/241 (75%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||| || ||||| ||||||||| | ||||| |||||| ||| Sbjct 21355 TGTACTTGGTGACCGCCTTCGTTCCCTCGCTAACGGCGTGCTTCGCCAGCTCGCCGGGCA 21296 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || | |||||| ||||||||||| || | ||||||| ||||||||| | Sbjct 21295 GGAGAAGCCTCACGGCAGTCTGGATCTCCCGCGACGTGATCGTGGAGCGCTTGTTGTAGT 21236 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| ||| ||||||| ||||||| |||| | ||||||||| || ||||| Sbjct 21235 GGGCCAAGCGAGACGCCTCGGCCGCGATGCGCTCGAAGACGTCGTTGACGAAGCTGTTCA 21176 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| ||| ||||||| || ||| ||||| |||||||| | |||||||| Sbjct 21175 TGATGCTCATCGCCTTGCTGGAGATCCCGGTGTCCGGGTGGACCTGCTTCAACACCTTGT 21116 Query 1485710 A 1485710 | Sbjct 21115 A 21115 >seq13230 Length=2258499 Score = 149 bits (164), Expect = 1e-29 Identities = 180/243 (74%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||| || || || ||||||||| ||||||| |||||| ||| Sbjct 486163 TGTACTTGGTGACAGCCTTCGTGCCTTCGCTCACGGCGTGCTTGGCCAGCTCGCCGGGCA 486222 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 | || || ||||||||||||||||| |||| |||||| ||| |||| |||| Sbjct 486223 GCAGAAGTCGGACGGCGGTCTGGATCTCCCGGGACGTGATCGTCGAGCGTTTGTTGTAGT 486282 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | || | ||| | ||||||| | ||||||| |||| | |||||||||||| || Sbjct 486283 GAGCCAAACGCGAC--GCCTCGGCGGCGATGCGCTCGAAGACGTCGTTGACAAAGCTATT 486340 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 ||| || ||| | |||| ||||||| || ||| |||||||| ||||| || || || Sbjct 486341 CATTATGCTCATAGCTTTGCTGGAGATACCGGTGTCCGGGTGCACTTGCTTCAGTACTTT 486400 Query 1485708 GTA 1485710 || Sbjct 486401 ATA 486403 >seq13181 Length=1089730 Score = 104 bits (114), Expect = 4e-16 Identities = 170/243 (70%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || ||||| || || || ||| |||||| | |||| ||||||| ||| Sbjct 863461 TGTACTTGGTCACTGCCTTCGTGCCTTCGCTGACCGCGTGCTTCGCCAATTCGCCGGGCA 863520 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 | || | ||| ||||| || ||||| |||| | ||| || ||||||||| | | Sbjct 863521 ACAGGAGCCTCACCGCGGTTTGTATCTCCCGGGAGGTGATAGTCGAGCGCTTGTTGTAAT 863580 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 |||| || | || || | | |||| | |||| || ||||||||||| || Sbjct 863581 GCGCTAATCTCGAC--GCTTCCGCGGCGATTCTTTCGAACACATCGTTGACAAAGCTATT 863638 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||| | |||| ||||||| || ||| || || || ||||| || || || Sbjct 863639 CATGATGCTCATAGCTTTGCTGGAGATCCCAGTGTCCGGATGTACTTGCTTCAGTACTTT 863698 Query 1485708 GTA 1485710 ||| Sbjct 863699 GTA 863701 >seq13242 Length=2670346 Score = 102 bits (112), Expect = 1e-15 Identities = 153/217 (71%), Gaps = 3/217 (1%) Strand=Plus/Minus Query 794342 CTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCT 794401 ||||||| || ||| | ||||||||||||| ||| || ||||||| || ||||||| Sbjct 1010285 CTTCGTCTCGCGAGATGAGTTCGTTGCTAAAGGTGAGCCCTGGCATGACCCCTCGCTTCT 1010226 Query 794402 TGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGC 794461 | ||||| ||||| || |||||||| ||| ||||| ||||| || || || || Sbjct 1010225 TCAGCCAGAAGATCGCTGCAAAACTGCCGCTGAAGAAGATACCCTCAACCGCCGCGAACG 1010166 Query 794462 CGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACT 794521 ||| | || || | ||| || | || ||| | |||||||| |||| ||||| | Sbjct 1010165 CGATTACACGTTCAGGAAATGTAGC---GCTCTCGTGATTGATCCAGTTCAATGCCCAAT 1010109 Query 794522 CTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGC 794558 ||||| || | ||| | || | ||| ||||| || Sbjct 1010108 TGGCCTTCTTTCCCACACAAGGAAGCGTCTCGATCGC 1010072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914836086070262