Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq13163 165 6e-36 seq13175 82.4 6e-11 >seq13163 Length=1194233 Score = 165 bits (182), Expect = 6e-36 Identities = 177/234 (76%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| | | |||||| |||| ||||||||| ||||| || || ||||| || || | Sbjct 711772 TCCTCCGCGGAGACGCAGGACCAGATGAAGCGTAGATTCCTTCTGGATGTTGTAGTCGGA 711831 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || ||| | || || ||||| ||||||||| | |||| | |||||||||||| || Sbjct 711832 AAGGGTTCTGCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGGAGG 711891 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||| ||||| ||||| | || ||||||| |||| | |||||||||| |||||| Sbjct 711892 AATACCTTCTTTATCTTGGATCTTAGCTTTGACATTTTCAATAGTGTCAGAAGCTTCTAC 711951 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAA 29792 || || || || ||||| ||||| | ||||| ||||| || ||||| || || Sbjct 711952 CTCGAGGGTGATGGTTTTTCCAGTGAGAGTTTTCACAAAGATTTGCATGTTGAA 712005 Score = 120 bits (132), Expect = 2e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||| || || || ||||| ||||| ||||| || ||||| || | || || | Sbjct 709839 CGCAAAACTAAGTGGAGCGTAGATTCCTTTTGGATATTATAGTCGGAAAGAGTTCTGCCG 709898 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || ||||||||||| | || || | ||||||||||| ||||| ||||||||| Sbjct 709899 TCTTCCAGCTGTTTGCCAGCGAAGATTAAACGCTGCTGATCCGGAGGAATTCCCTCTTTG 709958 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | ||| || || |||||| ||||| ||| ||| ||||| || || || Sbjct 709959 TCCTGGATTTTGGCCTTCACGTTTTCTATGGTGTCGGAAGCTTCGACTTCGAGGGTGATG 710018 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||||||| || | || || || || ||||||||| Sbjct 710019 GTTTTGCCCGTGAGAGTCTTTACGAAGATCTGCATT 710054 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| |||||||| ||||| || | ||||| | || |||||||| ||||| |||||||| Sbjct 711616 ATCTTCGAGTTGCTTGCCGGCGAAAATCAAACGCTGTTGATCCGGGGGAATCCCCTCTTT 711675 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | ||| || || |||| | ||||| ||| ||| ||||| || || || Sbjct 711676 GTCCTGGATTTTGGCCTTCACGTTTTCAATGGTGTCCGAAGCTTCGACTTCCAGGGTGAT 711735 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||||||| |||| || || || || ||||||||| Sbjct 711736 GGTTTTGCCCGTTAGAGTCTTTACGAAGATCTGCATT 711772 >seq13175 Length=923006 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || |||||||| ||||| || |||||| ||||||||||| || ||||| ||||||||| Sbjct 562034 TCCTCGAGTTGCTTGCCCGCGAATATCAGTCTTTGCTGATTGGGAGGAATGCCCTCTTTG 562093 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| |||||| | || || | || | ||||| ||| || || || || || || Sbjct 562094 TCTTG-AATTTTAGCCTTCACGTTCTCGATCGTGTCCGAAGCCTCGACCTCCAGCGTGAT 562152 Query 29751 AGTTTTG 29757 |||||| Sbjct 562153 CGTTTTG 562159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385156955559378