Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_023581.1 Length=77792 Score E Sequences producing significant alignments: (Bits) Value seq9795 183 2e-41 seq12202 127 1e-24 seq8126 125 4e-24 >seq9795 Length=3651 Score = 183 bits (202), Expect = 2e-41 Identities = 660/1025 (64%), Gaps = 45/1025 (4%) Strand=Plus/Plus Query 68055 GCAATACGTTCTGGACGTAAAACCATAAAGCCATAGTACCATTTGATTGACATGAAACCA 68114 ||||| | ||| ||||| | || || | || ||||||||||||||||| |||| || Sbjct 2645 GCAATCCATTCAGGACGCAGAATCAGTGAACCGTAGTACCATTTGATTGAGGTGAAGCCC 2704 Query 68115 CGTTCACCAAATGGATCATCCGCATTA---GCAGTCGCTTCACCCGGCTTCTTATGGTAG 68171 ||||||| | || || |||| | |||||| | || || ||||| |||| Sbjct 2705 ATTTCACCATACGG---GTCTGCATAAGATGCAGTCTCGATGCCTGGTTTCTTGGTGTAG 2761 Query 68172 ATAACAAACTTAGTTGATTTACCAGAAGTTTGGAAACCAATAGTAGTGAATGATTCAGAA 68231 |||| |||||| | |||||| || |||||||| ||||| ||||| || ||||| Sbjct 2762 GTAACGAACTTAACAGTCTTACCATCTGTCTGGAAACCGATAGTGGTGAAGGAGCCAGAA 2821 Query 68232 CCAAC-CACTAACATTGGGAAGATGTCAGCTTTACCATCAGTAGTATGGATAGCTTTGTC 68290 ||||| ||| | ||||||||| | |||| |||||| ||||| | | | || || Sbjct 2822 CCAACACAC-AGCATTGGGAATACGTCATACTTACCAGAAGTAGCGTAGTAACCTGGGTT 2880 Query 68291 ATCGCCAACTGCTTTACCTTTACCTGCCCACTTCATCATTTCAGGAACAATGATGATACG 68350 ||||| | ||| ||||||||| |||| ||| | |||||||| |||||| || Sbjct 2881 GGTAGTAACTGTTGCACCAGCACCTGCCCATTTCAGCATCTTAGGAACAACGATGATGCG 2940 Query 68351 GAATTGGTCAATAGTACCAACTTCACCACGAAGGATTTCACCACCGTTAGCATACTGCTC 68410 ||| | |||| ||||| |||||| | ||||| |||| | | ||| ||||||| Sbjct 2941 GAAAGAAGCGATAGAACCAATTTCACCTTGCAGGATAGTACCAGCATCAGCGTACTGCTG 3000 Query 68411 TACAGAGATAAACGCT---TTTTCACCATGGTAATCTTTCATCTTGCGAAG-AT--GTTG 68464 || | ||| || ||| || ||| | || ||||||||||| || || || ||| Sbjct 3001 AACCGGGATGAAAGCTGCATTGTCA-AACGG--GTCTTTCATCTTACGCAGCATCAGTT- 3056 Query 68465 GATAACTTCTGATCCTGCATACATTACGCGAGCAGCGTTAATAGTACGGGTATCCACCAT 68524 | ||| || || |||| | |||||| | |||| ||| ||||| | ||| Sbjct 3057 --CCAGTTCAGAACCAATGTACAGAGCACGAGCACCCGGAATAACACGAGTATCAATCAT 3114 Query 68525 ACGAGAACCAGAAATGATCTTCGTATTTTTAGGGGTACGGTTGTTATCCAAAGTAACAGA 68584 ||| ||||||| ||| | ||| || | |||| |||||| || || ||| || Sbjct 3115 ACGCGAACCAGCAATCAGCTTGGTCTGCATAGGACACAGGTTGTCATTCAGAGT----GA 3170 Query 68585 TAAGCGT----GCAAAGTCTTCATACTTAACTAATGAAG-----TCTCATCCA--CTTNN 68633 || | | | | | ||||| |||||| | || || ||| | | Sbjct 3171 TACCCATCTTAACCAGACCGTCATAGGTAACTACAGTAGCAGTACCTTCACCAGTCATAT 3230 Query 68634 NNNNNNNNNNNNNNNNNNNNNNNNNATA--CAACAACACCTGCAGAGTTAATCAAGTCGA 68691 ||| ||||||||| ||| || | || ||| | Sbjct 3231 CTGCATTAGAGGTAGCAGCACCCGGATAACGAACAACACCAGCACCATTCAGCAGGTCAA 3290 Query 68692 TCTGTAAAAGATCTTCTGTAATTTCATTGGCTGCATTTACCATTGATTTAGTTACTTGCG 68751 |||| || | || || || ||||| || || | || || | | | | | ||| Sbjct 3291 TCTGCAACTGGTCCTCAGTGATTTCGTTAGCACCTTTAACAGCTTCCTGAATCAGGTGCA 3350 Query 68752 CTTCTAAATCTTCTTCGGTATCGAAGTCCATTGACTCTTGTGTGTAGTCAGTGAAGTAAC 68811 || | ||||| || ||||| || ||||||| || || || | ||| |||| ||| Sbjct 3351 TATCCAGCTCTTCGTCAGTATCAAAATCCATTGCTTCCTGAGTCCACTCATAGAAGAAAC 3410 Query 68812 CATACTTCTGGAAAGTACCTTTAATTGTTTTACGTGTGAAGCCAACACGGTTTACACGAC 68871 | | |||| || ||| |||| | |||| ||||| ||||| ||||| ||||||| Sbjct 3411 CGAATTTCTTGATAGTGCCTTGCAGCTGAATACGGGTGAAACCAACGCGGTTAACACGAC 3470 Query 68872 CACC-TACT---TCGGATACTAAAGGCATCTTCGCAGTGATAGTACCGATGTCTTTAGAC 68927 |||| | || || || || |||| || | | ||| ||||| |||||||| Sbjct 3471 CACCATTCTCAGTCAGA-GCT---GGCAGTTTAGATGGGATGGTACCAATGTCTTTGCTA 3526 Query 68928 GAACCGTATAAGTTACCGTCTTTAAtttttttACCAGTAGCATCGATACCCTGGTCATTG 68987 ||||| || | |||||||| ||| | ||||| |||||| ||||| ||||| ||| Sbjct 3527 GAACCATACAGGTTACCGTTAGCAATGGTAGCACCAGCAGCATCAATACCTTGGTCGTTG 3586 Query 68988 ATGTTACGATCATCAAGCAATGGAATATGAACATAACGTTCAATCATCTTACCTGAGTTC 69047 | |||||| ||||| |||| ||| || | ||| | | ||| ||||||| |||| Sbjct 3587 ACGTTACGGTCATCCAGCAGTGGGATGTAGTGATACAGCTTAATGGTCTTACCCATGTTC 3646 Query 69048 TTCGG 69052 || || Sbjct 3647 TTAGG 3651 >seq12202 Length=11894 Score = 127 bits (140), Expect = 1e-24 Identities = 498/765 (65%), Gaps = 20/765 (3%) Strand=Plus/Minus Query 74391 AACCAGATATTACGATTCATCATCTGGTCA-GTAATCCACGGAATGAATCCTGCTTGTTG 74449 |||||||| || | |||||||||| |||| |||| | | | |||||||| | ||||| Sbjct 8575 AACCAGATGTTCCTGTTCATCATCTCGTCACGTAA-CAAAGAGATGAATCCACCCTGTTG 8517 Query 74450 TCCTGTTACTTCTACACCGACTT-CTAATGGTCGCCACTTCTGAACCAATCGGAATAGAT 74508 || || ||||| | ||| ||| || | ||| | ||| || | || || || | Sbjct 8516 ACCAGTAACTTCAATACCAACTGACTGA-GGTTGGTACTCAACTACTAGTCTAAAGAGGT 8458 Query 74509 CATTCATCGTATGATCCATAGTCTGACGCTTACAGATACCATCACACCAGAACCAATCAC 74568 ||| | | | | ||| ||||| ||||||||||||| |||||||||||||| Sbjct 8457 CATCAAAGTTCTTGTTCATCAATTGACGACGACAGATACCATCAACCCAGAACCAATCAC 8398 Query 74569 C-TAGATGATTCACTGCCCATACTGATATGAAGTTAA-AGTCTGCAGACTGTTTAGCACT 74626 | | | | ||| | ||||||||| || || || | || |||| || || || || | || Sbjct 8397 CATTGCT-ATTGATTGCCCATACAGAAAT-AACTGAATAGTCAGCTGATTGCTTCTCGCT 8340 Query 74627 GGTTGCAAAGTCAGTAGTGATATAGAAATTAAATGAATCCTTATTAGCCATAAGAGTTCT 74686 || || |||||||| ||||||||||| ||||| | | | || | ||||| || Sbjct 8339 AGTAGCGAAGTCAGTGGTGATATAGAAGTTAAACATACCTCTGTTCAGTAAAAGAG-ACT 8281 Query 74687 TAAAC-TATACCAACGGATATCACTCTCTTGAATCAATCGGTCATCATCACTCATGATTC 74745 || | | ||||| |||||||| || | | | | || |||||| | || | Sbjct 8280 TACGCTTGTACCATTGGATATCAGATTCCAGTACAAGCCTCTCTTCATCAGAGGTAATCC 8221 Query 74746 GTAACATAAGTTCCTGGTTAAAGCCTGCAATAGTACCTTCACCAATAGCCATATCATAAG 74805 ||||| |||||||| || || | || | || | | | ||| | ||||| Sbjct 8220 TCAACATCAGTTCCTGATTGAATGCAGCCACCTGTCCAGTAGCTACAGCAAGGTCATATT 8161 Query 74806 TACGTTTCACATAATCATAAGTAAAACGGTCAGGCCATGATCCCCGGAATTCCTCTCTAC 74865 | || || | ||||| | || ||||| ||| | || || || ||||| Sbjct 8160 GGCTCTTAACGAAGTCATATGAGAAGCGGTCTTCCCAAGCACCTACAAAGTCTTCTCTCG 8101 Query 74866 TACATGGGAACTTCTCACAGATCGGATATACGTTGACTTCCCATTCACCGGATTCAACCA 74925 ||| ||||| |||||||| || || |||||||||| | ||| |||| ||||| || Sbjct 8100 CACAAGGGAATTTCTCACAAATGGGGAATACGTTGACGTACCAACCACCTGATTCCACTG 8041 Query 74926 CTTCATATAATGGATCACCTGC--ATTAAACGGTGTACCACACCAGAAGGTTTTACTCTT 74983 |||| |||| | || | | | ||||| ||||| |||| | | | || || Sbjct 8040 CTTC--ATAAAGAATATCGTTCTTGTTAAAGGGTGTGCCACTGAAAACAATCTTTCTACG 7983 Query 74984 AGTTGGGTGCATTGCATACTTAATTGCTTTATGCACTGTATCTTTAATAG--AAGATA-T 75040 ||| |||| || ||||| | || |||| | || ||||| || || | ||| | Sbjct 7982 AGTAGGGTCCAAAGCATAATCAACACCTTTGTATACAGTATCCTTGATGGCCTGCATAGT 7923 Query 75041 AACCGTAGGTGAACGGGCATCTTCATCTGAAACCAAGTCATCTAGGATAGCTAACTGCGG 75100 | ||| | | ||||| ||||| ||| | |||||| | | ||| || || Sbjct 7922 TGACTTAGATTTA---GCATCATCATCACTAACGAGGTCATCCAACACAGCCAAAACAGG 7866 Query 75101 ACGCTTACCTAATTCCTTAGTACCACGTACACCTGTCTTAGCACC 75145 ||| ||||| || || |||||||||| || ||||||||||| Sbjct 7865 ACGTTTACCGAAGATTTTGGTACCACGTAAGCCAGTCTTAGCACC 7821 >seq8126 Length=2631 Score = 125 bits (138), Expect = 4e-24 Identities = 388/589 (66%), Gaps = 21/589 (4%) Strand=Plus/Minus Query 71387 ATCTTCTTCTGCAGTAGATATACTAAGTTTTAAATCAAACTCACCAGACAAATCATCAGG 71446 |||| |||| |||||||| ||||| | || | ||||| | |||| || ||||| Sbjct 592 ATCTGCTTCAGCAGTAGAAATACTTAACTTAAGGTCAAAGTTTCCAGCTAATTCATCTCT 533 Query 71447 ACGAATAGGTACGAATTCAGTATTAGTAATACGTACATAATCTTGATCAGTTAAGAACAT 71506 ||||| | |||||| ||| |||||| || |||||| |||| |||| ||||||| Sbjct 532 ACGAACTGATACGAAATCATCATTAGTGATTCGTACAACTTCTTCTTCAGATAAGAACTC 473 Query 71507 TGCATTCATAGTAATGAACTTACGACCTAACTGAATAATACCTTCTGAGATACGGCGTAA 71566 |||||||||| | |||||| || | | | ||| |||| | | | || | Sbjct 472 AGCATTCATAGATACAAACTTATAGCCAATATCCACAATGCCTTGAGCCAATCTACGAAG 413 Query 71567 GATAGATAACTCACGTTTACTGGCTGCATCCATAGCACTACGTACTGCTGCAGCCGTGTC 71626 ||| ||| ||||||||| || ||||||| || | ||| | | ||||| || Sbjct 412 AATACCTAATTCACGTTTAGAAGCAGCATCCAATGCGCCACGAATACCAGCAGCTACATC 353 Query 71627 ACCTAAC---TGTGCACCATTCATACCTTGGCTAAATGCTTTAACACCTGTTAATGCTTC 71683 ||||| |||| || |||||||| |||| ||||| || || | | ||| Sbjct 352 GCCTAAAGCTTGTGATGCA---ATACCTTGTGAGAATGACTTAACGCCAGTAAGAGATTC 296 Query 71684 TGCGTCACCATTCCAATACTGCTGCATGTACATAA---CAGATTGAGGAATCTCAGGGAA 71740 || ||| ||| |||||| ||| || | | || |||||||||||||| | Sbjct 295 AGCTTCATTGTTCTGATACTGAATCAT---CAGAGGCGCTGACTGAGGAATCTCAGGAGA 239 Query 71741 CTTATGTGTGTAGATAGAATTTGCAGCATTACCATTCTGAGGATTGAAATAGTAATCTTC 71800 | |||| |||||| | | | | | ||| | | |||||| | || ||||| Sbjct 238 CGTATGCATGTAGACACCTTGTCTTGGGT--CCA-CGTTTGCATTGAACTCATAGTCTTC 182 Query 71801 ACCGTTCTTATA-TCGGGTGAAGTTTGTTGCATCTAGGAAACCTTTAGAGAAACCAGTTT 71859 || || | | | | || ||| || |||| | | ||||| | |||||||| Sbjct 181 GCCCTTATCAAACTTACGT-CTGTTAGTCACATCCAACATGTCTTTACGAATACCAGTTT 123 Query 71860 GACCATTGGCACTACG-TCCA-AATAGGTCAACCATACCACGTGTCGTAGCACCTAAGAT 71917 ||||||| |||||||| ||| |||| |||| ||| |||| || ||||| || | || Sbjct 122 GACCATTAGCACTACGAGCCAGAATA--TCAATCATGGCACGAGTAGTAGCTCCAATAAT 65 Query 71918 CTTCTGGTTATCTTTTAATAACTCTGCATCCGGTTCGCCATATACAGAG 71966 |||||||||||||| | ||| | |||| ||||| ||||| | |||| Sbjct 64 CTTCTGGTTATCTTCCAGTAAAGCACCATCAGGTTCACCATAGATAGAG 16 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 248769396878314