Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq12921 141 7e-28 seq13246 98.7 7e-15 >seq12921 Length=52531 Score = 141 bits (156), Expect = 7e-28 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282329 TGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAA 282388 || || |||||||||||||| |||| || || ||||| |||||||| | ||||| | Sbjct 5442 TGTTTCTTATCAAGACCATAAGCAAGCGCTGCGGCAGTCGGTTCATTTACTATTCTGAGT 5501 Query 282389 ACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAA 282448 ||||| | || || ||| ||||||||||||| || ||||| | ||| || ||||| || Sbjct 5502 ACATTTAATCCGGCGATTTTTCCTGCATCTTTTGTTGCTTGACGTTGAGAGTCGTTGAAG 5561 Query 282449 TATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTT 282508 ||||| || || || || || |||||| ||||||| | ||||| |||||| ||||| Sbjct 5562 TATGCTGGCACTGTTATCACAGCATCTTTTACTTCCTCTCCAAGATAAGCTTCTGCTGCC 5621 Query 282509 TGTTTCATTTT 282519 | |||||| || Sbjct 5622 TCTTTCATGTT 5632 Score = 104 bits (114), Expect = 2e-16 Identities = 248/371 (67%), Gaps = 18/371 (5%) Strand=Plus/Plus Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 || ||||| ||||| | |||||||| ||||| || ||||| || || | ||||||| Sbjct 4563 ATTCCATTTGCATCTATGTCAAATGTTACTTCGATCTGAGGAACTCCACGAGGAGCAGGA 4622 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 || |||||||||||| |||| || || || || || | ||||||| |||| Sbjct 4623 GGTATCCCTTCCAAACTAAACTGACCAAGTAACTTGTTGTCAACCGCCAATTTTCTTTCA 4682 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620 || | | | || ||||| | ||||| |||||| ||||| ||| || ||| Sbjct 4683 CCTTGATGTACCTTAATTGTAACGGCTGTTTGGTTATCTTCTGCAGTTGAAAACAC-CTG 4741 Query 281621 -GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATA--CCACCA 281677 ||||||||| ||||| || || || | |||||| | ||| |||| || || Sbjct 4742 AGATTTTTTAGTGGGAATAGTAGTATTACGTTCAATA--AGTGGAGTAAATACTCCTCCT 4799 Query 281678 GCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTT 281737 ||||| | |||||||||||| ||||| ||||||| ||| | | || | || Sbjct 4800 AGAGTTTCAATACCAAGAGAAAGTGGAGTCACATCAAGTAGTAACACAT------CTCTT 4853 Query 281738 TCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 281797 ||||| ||| || || | || || | ||||| ||| ||| ||| ||||| Sbjct 4854 ACATCACCTTG------AATGATCCCCGCCTGTACTGCAGCTCCAATTGCTACAACTTCA 4907 Query 281798 TCAGGATTAAC 281808 |||||||| || Sbjct 4908 TCAGGATTTAC 4918 >seq13246 Length=2934203 Score = 98.7 bits (108), Expect = 7e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 86119 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 86178 ||||| ||||| || ||||| ||||| |||||||||| || |||| || || ||| Sbjct 801157 CCGTAAGCAAGCGCAGCTGCGGTTGGCTCATTAATTACACGTAGTACATTCAATCCGGCA 801098 Query 86179 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 86238 |||| | ||| ||| || || |||| |||| ||| |||||||| |||||||||||| Sbjct 801097 ATTTGACCAGCATCCTTTGTCGCCTGTCGTTGTGAGTCGTTAAAATAGGCTGGTACAGTA 801038 Query 86239 ATAACTGCTTTATT 86252 ||||| || || || Sbjct 801037 ATAACGGCATTCTT 801024 Score = 95.1 bits (104), Expect = 9e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 || || |||| ||||| || ||||| |||||||| | | | ||||| | || ||| Sbjct 801157 CCGTAAGCAAGCGCAGCTGCGGTTGGCTCATTAATTACACGTAGTACATTCAATCCGGCA 801098 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 ||| || ||||| || || || |||| |||||| ||||||||||| || || |||||| Sbjct 801097 ATTTGACCAGCATCCTTTGTCGCCTGTCGTTGTGAGTCGTTAAAATAGGCTGGTACAGTA 801038 Query 282464 ATAACGGCAT 282473 |||||||||| Sbjct 801037 ATAACGGCAT 801028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739979488228308