Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq13163 116 4e-21 seq13242 91.5 1e-13 >seq13163 Length=1194233 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | ||||| || | ||||| |||||||| || || |||||||| ||| Sbjct 711773 CCTCCGCGGAGACGCAGGACCAGATGAAGCGTAGATTCCTTCTGGATGTTGTAGTCGGAA 711832 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || |||||| ||||| || |||||| ||||||||||||||||||| ||||| Sbjct 711833 AGGGTTCTGCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGGAGGA 711892 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || |||||||| || || || ||| | | ||| | ||||| | | |||||| Sbjct 711893 ATACCTTCTTTATCTTGGATCTTAGCTTTGACATTTTCAATAGTGTCAGAAGCTTCTACC 711952 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | || || || || | ||||| || || |||||||| Sbjct 711953 TCGAGGGTGATGGTTTTTCCAGTGAGAGTTTTCACAAAGATTTGCAT 711999 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 |||||| || | ||||||||||| || | |||||||| ||||| || || || ||| Sbjct 709826 GCCTCCGCGAAGTCGCAAAACTAAGTGGAGCGTAGATTCCTTTTGGATATTATAGTCGGA 709885 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | || || |||||| || ||||| ||||| |||| | ||| |||||||| ||||| Sbjct 709886 AAGAGTTCTGCCGTCTTCCAGCTGTTTGCCAGCGAAGATTAAACGCTGCTGATCCGGAGG 709945 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || || |||||||| ||||| || | | ||| | ||||| | | ||| || Sbjct 709946 AATTCCCTCTTTGTCCTGGATTTTGGCCTTCACGTTTTCTATGGTGTCGGAAGCTTCGAC 710005 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||| | || | || ||||| || | || |||||||| || ||||| Sbjct 710006 TTCGAGGGTGATGGTTTTGCCCGTGAGAGTCTTTACGAAGATCTGCAT 710053 >seq13242 Length=2670346 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 50186 AGACTTAATACTCAACGCTTTCGATAATATTCCGTGTGTGCGTAAAAAGGACGATTGGGC 50245 |||||| || | || || |||| | |||| |||||| | || |||| | ||||||| Sbjct 1010056 AGACTTCTTATTTAATGCGATCGAGACGCTTCCTTGTGTGGGAAAGAAGGCCAATTGGGC 1010115 Query 50246 ATTGAAATGGACTaaaaacaaaaaaCTTACTTTGGCCGAACGTTTAGTGGCGTTTGCCAT 50305 |||||| |||| || || | | ||| || | |||||| || | ||||| || Sbjct 1010116 ATTGAACTGGATCAATCACGAGAGCGCTACATTTCCTGAACGTGTAATCGCGTTCGCGGC 1010175 Query 50306 AGTTGAAGGTGTGtttttttCCGGTAGCTTTGCAGCCATATTTTACATTAAAACCTTAGG 50365 ||||| ||| | || || ||| || |||||||| || || | | || | ||| Sbjct 1010176 GGTTGAGGGTATCTTCTTCAGCGGCAGTTTTGCAGCGATCTTCTGGCTGAAGAAGCGAGG 1010235 Query 50366 CATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGAAG 50415 | ||||| || ||||| ||||||||||| | || ||||| ||||||| Sbjct 1010236 GGTCATGCCAGGGCTCACCTTTAGCAACGAACTCATCTCGCGAGACGAAG 1010285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488463036045600