Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq13037 246 1e-59 seq13027 96.9 1e-14 >seq13037 Length=130070 Score = 246 bits (272), Expect = 1e-59 Identities = 307/421 (73%), Gaps = 0/421 (0%) Strand=Plus/Plus Query 188777 TTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAACATTGGCTGATATGTTACATG 188836 |||| || |||||||| ||||| || || | || ||||| | ||| | | | | ||| Sbjct 95047 TTGGTCCCACTGGTTCTGGTAAGACTTTGCTAGCCAAAACACTTGCTAAAGTTTCAGATG 95106 Query 188837 TACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGCTGGTTATGTAGGTGAAGATG 188896 | || | ||||| |||||||||| ||||||| || || |||||||| ||||| |||| Sbjct 95107 TGCCATTTGCTATGGCTGATGCAACAACTTTAACTGAGGCAGGTTATGTGGGTGATGATG 95166 Query 188897 TGGAAAACGTATTGCTTCGTTTAATCCAAGCAGCTGATTACGATATCGAATTAGCGGAAC 188956 | |||| ||| || |||||| | ||||| || |||| || || | | ||| | | Sbjct 95167 TAGAAAGCGTGTTATCGCGTTTATTACAAGCTGCAAATTATGACATTGCAAAAGCACAGC 95226 Query 188957 GTGGAATTGTATATATCGATGAAGTAGATAAAATTGCTAGAAAATCAGAAAGCACATCCA 189016 |||| || || | ||| |||||| |||| || ||| | |||||||| |||||||| || | Sbjct 95227 GTGGTATAGTGTTTATAGATGAAATAGACAAGATTACAAGAAAATCTGAAAGCACCTCAA 95286 Query 189017 TTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTTTATTAAAAATCATTGAAGGTA 189076 | ||||| || || || || ||||| || ||||||||| | | || || || || |||| Sbjct 95287 TAACCCGTGACGTTTCAGGTGAAGGGGTCCAGCAAGCTCTGCTTAAGATTATGGAGGGTA 95346 Query 189077 CAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACACCCTCACCAAGAAATGCTTGAAA 189136 ||||||| | ||||| || ||||| || || |||||||| || ||||| | | || Sbjct 95347 CAGTTGCTTATGTTCCGCCACAAGGAGGGCGAAAACACCCACAACAAGAGTTTATACAAG 95406 Query 189137 TAGATACAACTAATATCTTGTTTATTCTTGGTGGAGCGTTTGATGGTCTTGAAAACATTA 189196 | ||||| | ||| || | |||||| ||| ||||| ||||| || || || || |||| Sbjct 95407 TGGATACTAGTAACATACTATTTATTTGTGGAGGAGCTTTTGAAGGCCTCGATAAGATTA 95466 Query 189197 T 189197 | Sbjct 95467 T 95467 >seq13027 Length=117870 Score = 96.9 bits (106), Expect = 1e-14 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 403934 ATATTGTGCGCCTGTAGCTCAGCTGGATAGAGCACGAGCCTTCTAAGCCCGCGGTCGTAG 403993 || ||||| ||| ||||||||||||||||||||| |||||||||||| |||||||| Sbjct 53620 ATGTTGTGTGCCCGTAGCTCAGCTGGATAGAGCATCAGCCTTCTAAGCTGAGGGTCGTAG 53561 Query 403994 GTTCGAATCCTACCAGGC 404011 |||||||||||||| ||| Sbjct 53560 GTTCGAATCCTACCGGGC 53543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591639985165184