Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_024140.1 Length=72028 Score E Sequences producing significant alignments: (Bits) Value seq9795 210 1e-49 >seq9795 Length=3651 Score = 210 bits (232), Expect = 1e-49 Identities = 667/1016 (66%), Gaps = 51/1016 (5%) Strand=Plus/Plus Query 60790 GCCACGGTCTTCAGCAGGGCGATCCACTCGGGGCGGAACACCA-TGAAGCCGTAGTACCA 60848 || || ||||| | ||| || ||||| || || || | | || |||| ||||||||||| Sbjct 2627 GCTACAGTCTTGAACAGTGCAATCCATTCAGGACGCAGAATCAGTGAA-CCGTAGTACCA 2685 Query 60849 CTTGATGGACATGAAGCCCATCTCGCCGTACGGATCACTGCGGTCG--GCAGTGGCTTCG 60906 ||||| || |||||||||| || || ||||| || ||| | ||||| | | Sbjct 2686 TTTGATTGAGGTGAAGCCCATTTCACCATACGGGTC--TGCATAAGATGCAGTCTCGATG 2743 Query 60907 CCAGGACGCTTGGTGATGATCTTGAACTTGACGTTCTTGCCATCGGTAGCGAAACCGACA 60966 || || ||||||| | | |||||| || |||| ||||| || |||||||| | Sbjct 2744 CCTGGTTTCTTGGTGTAGGTAACGAACTTAACAGTCTTACCATCTGTCTGGAAACCGATA 2803 Query 60967 GTGGTGAACGCCTCGGAAGCCACACACAGCATCGGGAAGACGCTGTACTTGCCGCCCGAC 61026 |||||||| | | ||| | ||||||||||| ||||| ||| ||||| || || Sbjct 2804 GTGGTGAAGGAGCCAGAACCAACACACAGCATTGGGAATACGTCATACTTACCA---GAA 2860 Query 61027 TCGT-GCATCGGAACCTGGTCGTTCGGGTCCACGGCCTTGC--CGACGCCAGCCCAGTGC 61083 || || | | ||||||| ||| | || | |||| | | || ||||| | | Sbjct 2861 --GTAGCGTAGTAACCTGG--GTTGGTAGTAACTG--TTGCACCAGCACCTGCCCATTTC 2914 Query 61084 ATCATCTGCGGGTTGACGATGACGCGGAAGCGACCCAGCTGGCCGACTTCGCCGTGCATG 61143 | ||||| || ||||||| |||||| | | | || | ||| || |||| | Sbjct 2915 AGCATCTTAGGAACAACGATGATGCGGAAAGAAGCGATAGAACCAATTTCACCTTGCAGG 2974 Query 61144 GTGGCACCACCGGCAGCGTACTTCTCGATGGGGATGAAGGCCGGATTGCCGTGGTTGTCC 61203 | | |||| | ||||||||| || | |||||||| || | |||| | ||| Sbjct 2975 ATAGTACCAGCATCAGCGTACTGCTGAACCGGGATGAAAGCTGCATTGTCAAACGGGTCT 3034 Query 61204 TTCATGGCTT-CGATGG-TCGGAACCAGATCGGAACCAACGTACAGAGCACGGGCGTTGC 61261 ||||| ||| || | || | |||| || ||||||| |||||||||||| || | Sbjct 3035 TTCAT--CTTACGCAGCATCAGTTCCAGTTCAGAACCAATGTACAGAGCACGAGCA---C 3089 Query 61262 CCACGGTA---CGGGTGTCGATCATGCGGGTACCGGTGATCATCTTGATCTTGGTCGGAG 61318 || || || || || ||||| || | ||| | |||| |||| ||| | ||| Sbjct 3090 CCGGAATAACACGAGTATCAATCATACGCGAACCAGCAATCAGCTTGGTCTGCATAGGA- 3148 Query 61319 CACGCGCGTTGTCCAGGTCCAGACGCAGACGCATC------AGCGAGTCGTAGGTGACCT 61372 | | |||||| | |||| | || |||| || ||| ||||| || Sbjct 3149 --CACAGGTTGTCA---TTCAGAGTGATACCCATCTTAACCAGACCGTCATAGGTAACTA 3203 Query 61373 CGGTGGAAGCATCGACTTCAG---------CGTCGGAGGTTGCAGCGCCCGGATAACGGA 61423 | || | || | | | ||| | | ||||| ||||| ||||||||||| | Sbjct 3204 CAGTAGCAGTACCTTCACCAGTCATATCTGCATTAGAGGTAGCAGCACCCGGATAACGAA 3263 Query 61424 CGGTGCCAGCCGAGTTGAGCAGGTCGATCTGGAGCAGGTCTTCGGTGATCTCGTTCGCGC 61483 | ||||| || |||||||| ||||| | | |||| || ||||| ||||| || | Sbjct 3264 CAACACCAGCACCATTCAGCAGGTCAATCTGCAACTGGTCCTCAGTGATTTCGTTAGCAC 3323 Query 61484 CCTTCACCATTTCGGTGGTGACGTGACCTTCCATCGCCGGATCGCTGTCGAAGTCGAGTT 61543 | || || ||| | | ||| |||| | | || | || || || | || Sbjct 3324 CTTTAACAGCTTCCTGAATCAGGTGCATATCCAGCTCTTCGTCAGTATCAAAATCCA-TT 3382 Query 61544 GCT-CTTGGGTGTACTCGCGGAAGAAGCCGTACTTCTCCAGCTTGCCCTTGATCTCGACA 61602 ||| | || || |||| |||||| ||| | |||| | |||| | | || | | Sbjct 3383 GCTTCCTGAGTCCACTCATAGAAGAAACCGAATTTCTTGATAGTGCCTTGCAGCTGAATA 3442 Query 61603 CGCTTGAAACCAACACGGTTCACGCGACCGCCGATCTCGGTGAGGGTCGGCATCTTCGCG 61662 || |||||||||| ||||| || ||||| || |||| || || | |||| || | Sbjct 3443 CGGGTGAAACCAACGCGGTTAACACGACCACCATTCTCAGTCAGAGCTGGCAGTTTAGAT 3502 Query 61663 GTGATGTTGCCCACGTCACGGCTCGAACCGTAGAGGTTGCCGTTGGCGATGGTAGCGCCG 61722 | |||| | || | ||| ||| ||||| || ||||| ||||| || |||||||| || Sbjct 3503 GGGATGGTACCAATGTCTTTGCTAGAACCATACAGGTTACCGTTAGCAATGGTAGCACCA 3562 Query 61723 GAAGCGTCGATACCCTGGTCGTTCACGTTGCGGTCGTCGAGCAGCGGGATGTAGTG 61778 | ||| || ||||| |||||||| ||||| ||||| || ||||| ||||||||||| Sbjct 3563 GCAGCATCAATACCTTGGTCGTTGACGTTACGGTCATCCAGCAGTGGGATGTAGTG 3618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230327577223682