Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_024367.1 Length=75028 Score E Sequences producing significant alignments: (Bits) Value seq12202 156 2e-33 seq12852 98.7 5e-16 >seq12202 Length=11894 Score = 156 bits (172), Expect = 2e-33 Identities = 473/724 (65%), Gaps = 10/724 (1%) Strand=Plus/Plus Query 5599 ATGTTCGGTGCAAAATCCGGTATCCGGGGTACGAAGATCTTCAACCGTCGTCCTGTCCTT 5658 ||||| ||||| || | || | || ||||| || |||||| |||||||| | Sbjct 7815 ATGTTTGGTGCTAAGACTGGCTTACGTGGTACCAAAATCTTCGGTAAACGTCCTGTTTTG 7874 Query 5659 GCTGTGATGGACGACTTGATCTCCGATGCTGACTCCAAATCCCCCACTGCGATGGAAGCA 5718 |||||| |||| ||| | | |||| ||| | ||||| | | ||| | || Sbjct 7875 GCTGTGTTGGATGACCTCGTTAGTGATGATGATGCTAAATCTAAGTCAACTATGCAGGCC 7934 Query 5719 ATCAACGACACGGTTTACTCTGGTGTTCAGTATGCTCTCGATCCGACTCGTCACAAGATG 5778 ||||| || || || ||| |||||| | |||||| | || || |||||| ||||| Sbjct 7935 ATCAAGGATACTGTATACAAAGGTGTTGATTATGCTTTGGACCCTACTCGTAGAAAGATT 7994 Query 5779 ATCCTGAATGGGACTCCGTTCAACAAAGAAGACATCGTGTATCAGGCAATTGAATCTGGT 5838 | | | ||| || || || ||||| | || || | ||| | ||| | ||||| ||| Sbjct 7995 GTTTTCAGTGGCACACCCTTTAACAAGAACGATATTCTTTATGAAGCAGTGGAATCAGGT 8054 Query 5839 GCATGGGAAGTGAACGTGTGGCCAGTCTGTAAAGAATTCCCCTGTGAGCGAGATGAATTC 5898 | ||| | || ||||| | || | ||| | ||||||| |||| | |||| || || Sbjct 8055 GGTTGGTACGTCAACGTATTCCCCATTTGTGAGAAATTCCCTTGTGCGAGAGAAGACTTT 8114 Query 5899 TCTGGAGCTTGGGAAGACCGATTCACCTATGACTACGTGAAAGAG-ATGTATGATTCTGC 5957 || |||||||||||||| ||| | ||||||| ||| ||||| ||||| ||| Sbjct 8115 GTAGGTGCTTGGGAAGACCGCTTCTCATATGACTTCGT-TAAGAGCCAATATGACCTTGC 8173 Query 5958 TGTGATGGAAGGCAAAGAGAAGTCCTTCCGTCAGGAACTTATGCTTCGAATCACGTCTGA 6017 ||| || | | | | ||| ||||||||| ||| | | || || ||||| Sbjct 8174 TGTAGCTACTGGACAGGTGGCTGCATTCAATCAGGAACTGATGTTGAGGATTACCTCTGA 8233 Query 6018 TGAATCTCGTCTGATCCAAGAAGATGAGATTGGTTGGAAGTCTCGTA---CTGAAATTCT 6074 |||| | || | | ||| ||| || ||| | |||| || | || Sbjct 8234 TGAAGAGAGGCTTGTACTGGAATCTGATATCCAATGGTACAAGCGTAAGTCTCTTTTACT 8293 Query 6075 GAACAACCGGAAGAACTACAACTTCTATATCACCACTGACTTTGCCACTTCGTCGAAGCA 6134 ||||| | | | | ||||||||||||||||||||||| || ||| |||||| Sbjct 8294 GAACAGAGGTATG---TTTAACTTCTATATCACCACTGACTTCGCTACTAGCGAGAAGCA 8350 Query 6135 AACTGCTGATTACACTGTGATTTCTGTGTGGGCTTACGACAAAGATGGCAATTGGATCTG 6194 | | ||||| || | || |||||||| ||||| | | | |||| ||||| |||| Sbjct 8351 ATCAGCTGACTATTCAGTTATTTCTGTATGGGCAATCAATAGCAATGGTGATTGGTTCTG 8410 Query 6195 GGTGGATGGTCTGTGCGAACGTCAACAGATGGGCAA-AACTATCAACGATCTGTTCAATT 6253 ||| |||||| | || |||||| |||| ||| |||| | | || || || | Sbjct 8411 GGTTGATGGTATCTGTCGTCGTCAATTGATGAACAAGAACT-TTGATGACCTCTTTAGAC 8469 Query 6254 TTGCACAAGAGTATCAGCCTCAAGGTGTGGGGATCGAGGTGACTGGTCAGCAAGGTGGTT 6313 | | | ||||| || ||||| || || || || || |||||||| || ||||| | Sbjct 8470 TAGTAGTTGAGTACCAACCTCAGTCAGTTGGTATTGAAGTTACTGGTCAACAGGGTGGAT 8529 Query 6314 TCAT 6317 |||| Sbjct 8530 TCAT 8533 >seq12852 Length=38369 Score = 98.7 bits (108), Expect = 5e-16 Identities = 137/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 41061 GTGCTTGTTATACACGAACCATGTGGAAAGACCGTCAACGAGGTTGTATTCCAGCAGCT- 41119 |||||| | | ||| |||| ||| | | |||||| | |||||| ||||| |||| Sbjct 24018 GTGCTTATCAGCCACATACCAAGTGCTTAAGCAGTCAACTAAGTTGTACTCCAGAAGCTC 24077 Query 41120 -TGGGAAGTTCGATCTGGGTAATGTCATGGATCTCTTCCACAGCATAGTTCCCAGCAAAC 41178 | | || || | ||||||||| || |||||| |||||||| ||||||||| Sbjct 24078 TTTGATAGGA--ATTTTAGTAATGTCAGCAATATCTTCCTGTGCATAGTTTCCAGCAAAC 24135 Query 41179 TCCTGAGCCTGAACCTTGAGACCCAACTCATTTCCTGCACAGGAATTGGTGGCGAGATAG 41238 || |||| ||| | || || || |||||||| |||||||| |||||||| || ||||| Sbjct 24136 TCATGAGACTGGGCTTTCAGCCCTAACTCATTACCTGCACATGAATTGGTAGCCAGATAC 24195 Query 41239 GTGATGATCT 41248 || | |||| Sbjct 24196 GTAACAATCT 24205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 239926026037682