Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq13060 102 1e-16 seq13171 100 4e-16 seq13174 98.7 1e-15 seq13136 98.7 1e-15 seq13254 96.9 5e-15 seq13131 96.9 5e-15 seq13111 96.9 5e-15 >seq13060 Length=241660 Score = 102 bits (112), Expect = 1e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 |||||||| |||||||||||||||||| |||| ||||| | ||||||||||||||||||| Sbjct 227481 ATTCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 227422 Query 8716 TCCCCGACGAGGAG 8729 |||||| || |||| Sbjct 227421 TCCCCGTCGGGGAG 227408 Score = 93.3 bits (102), Expect = 6e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| ||||||||| Sbjct 227408 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 227467 Query 139413 TACTAACGAGGATTTT 139428 ||||| |||||| ||| Sbjct 227468 TACTATCGAGGAATTT 227483 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/72 (89%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 227479 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 227420 Query 11789 CCCGACGAGGAG 11800 |||| || |||| Sbjct 227419 CCCGTCGGGGAG 227408 >seq13171 Length=910560 Score = 100 bits (110), Expect = 4e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||||| |||||||||||||||||| |||| ||||| | |||||||||||||||||||| Sbjct 405043 TTCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 405102 Query 8717 CCCCGACGAGGAG 8729 ||||| || |||| Sbjct 405103 CCCCGTCGGGGAG 405115 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/72 (89%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 405044 TCCTCGATAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 405103 Query 11789 CCCGACGAGGAG 11800 |||| || |||| Sbjct 405104 CCCGTCGGGGAG 405115 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| ||||||||| Sbjct 405115 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 405056 Query 139413 TACTAACGAGGA 139424 ||||| |||||| Sbjct 405055 TACTATCGAGGA 405044 >seq13174 Length=920705 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 8654 TTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCG 8713 || ||||||| |||||||||||||||||| ||||||||| || |||||||||||||||| Sbjct 812642 TTTTTCCTCGATAGTATAGTGGTTAGTATCTCCGTCTGTCACATGGGAGACCGGGGTTCG 812583 Query 8714 ATTCCCCGACGAGG 8727 |||||||| || || Sbjct 812582 ATTCCCCGTCGGGG 812569 Score = 87.8 bits (96), Expect = 2e-12 Identities = 62/70 (89%), Gaps = 1/70 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| ||||||||| || |||||||||||||||||||| Sbjct 812638 TCCTCGATAGTATAGTGGTTAGTATCTCCGTCTGTCACATGGGAGACCGGGGTTCGATTC 812579 Query 11789 CCCGACGAGG 11798 |||| || || Sbjct 812578 CCCGTCGGGG 812569 Score = 86.0 bits (94), Expect = 8e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 139355 CCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTATA 139414 || || |||||| ||||||||||||||||| || |||| |||| |||| ||||||||||| Sbjct 812569 CCCCGACGGGGAATCGAACCCCGGTCTCCCATGTGACAGACGGAGATACTAACCACTATA 812628 Query 139415 CTAACGAGGA 139424 ||| |||||| Sbjct 812629 CTATCGAGGA 812638 >seq13136 Length=507102 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| |||| ||||| | ||||||||||||||||||||| Sbjct 423271 TCCTCGGTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 423330 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 423331 CCCGCCGGGGAG 423342 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786 |||||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||| Sbjct 423269 AGTCCTCGGTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 423328 Query 11787 TCCCCGACGAGGAG 11800 |||||| || |||| Sbjct 423329 TCCCCGCCGGGGAG 423342 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| ||||||||| Sbjct 423342 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 423283 Query 139413 TACTAACGAGGA 139424 ||||| |||||| Sbjct 423282 TACTACCGAGGA 423271 >seq13254 Length=3624882 Score = 96.9 bits (106), Expect = 5e-15 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786 |||||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||| Sbjct 2022579 AGTCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 2022520 Query 11787 TCCCCGACGAGGAGG 11801 |||||| || ||||| Sbjct 2022519 TCCCCGCCGGGGAGG 2022505 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 2022577 TCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 2022518 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 2022517 CCCGCCGGGGAG 2022506 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 2022506 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 2022565 Query 139413 TACTAACGAGGATTT 139427 ||||| |||||| || Sbjct 2022566 TACTACCGAGGACTT 2022580 >seq13131 Length=480535 Score = 96.9 bits (106), Expect = 5e-15 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786 |||||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||| Sbjct 284218 AGTCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 284159 Query 11787 TCCCCGACGAGGAGG 11801 |||||| || ||||| Sbjct 284158 TCCCCGCCGGGGAGG 284144 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 284216 TCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 284157 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 284156 CCCGCCGGGGAG 284145 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 284145 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 284204 Query 139413 TACTAACGAGGATTT 139427 ||||| |||||| || Sbjct 284205 TACTACCGAGGACTT 284219 >seq13111 Length=348602 Score = 96.9 bits (106), Expect = 5e-15 Identities = 71/80 (89%), Gaps = 2/80 (3%) Strand=Plus/Minus Query 11723 AACCCA-GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGG 11780 |||||| ||||||| |||||||||||| ||||| |||| ||||| | ||||||||||||| Sbjct 207083 AACCCAAGTCCTCGATAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGG 207024 Query 11781 TTCGATTCCCCGACGAGGAG 11800 |||||||||||| || |||| Sbjct 207023 TTCGATTCCCCGTCGGGGAG 207004 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 207075 TCCTCGATAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 207016 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 207015 CCCGTCGGGGAG 207004 Score = 89.7 bits (98), Expect = 7e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 207004 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 207063 Query 139413 TACTAACGAGGATTTTGGT 139431 ||||| |||||| || ||| Sbjct 207064 TACTATCGAGGACTTGGGT 207082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652736607295520