Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq13245 134 1e-26 seq12540 86.0 6e-12 seq13242 82.4 7e-11 >seq13245 Length=2836997 Score = 134 bits (148), Expect = 1e-26 Identities = 147/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 133471 CTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAA 133529 |||||||||| ||||| ||| | ||| | | | ||||| ||||| ||||| ||| | Sbjct 675195 CTTTCTGTATGTTGTAGTCGGAGAGTGTGCGTCCA-TCCTCCAGCTGTTTGCCGGCGAAG 675137 Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 |||||||||||||| || || |||||||| |||||||| |||||| ||||| | | Sbjct 675136 ATGAGCCGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTC 675077 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 || | || |||| | |||||| |||| ||||| ||| ||||| || || || || ||| Sbjct 675076 TCGATAGTATCGGACGCCTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACG 675017 Query 133650 AAAATCTGCATGG 133662 || |||||||||| Sbjct 675016 AAGATCTGCATGG 675004 >seq12540 Length=18453 Score = 86.0 bits (94), Expect = 6e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 20333 CCGCCGTTGCAACCCATGTCCACCGTGTCGCAGTCCACCAGCTGTTGCTCGCTCAAATCG 20392 |||||| |||| || ||| | ||||||||||||||||| ||||||| || | Sbjct 7902 CCGCCGCTGCAGCCGTCGTCGAGATCGTCGCAGTCCACCAGCTCTTGCTCGGACAGAGAC 7843 Query 20393 ACCAGACGGTCGTACTTGATGGCGTACTGGCTCTCGAGCGCGCCCAGGCCCGCAAACGCC 20452 | ||| || ||| || ||| |||||||||| ||||| |||| ||| || ||| Sbjct 7842 AGCAGCTGGCCGTGCTGGATCGCGTACTGGCCCTCGACGTTGCCCGTCACCGAGAAGGCC 7783 Query 20453 CAGCACGCGCCGCACATGCGCTGGTCCTTGACCGAGGTGACTTTATTGTAGTTGCGCCAG 20512 ||||||| |||||| ||| ||| | ||| |||| || || | | || |||||| Sbjct 7782 CAGCACGAGCCGCAACTGCCCTGATTCTTCACCGGAGTCACGACACCCTTCTTTCGCCAG 7723 Query 20513 TCAAAGCTGG 20522 || ||| ||| Sbjct 7722 TCGAAGGTGG 7713 >seq13242 Length=2670346 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 120667 TCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGCCTTTCGTCTTG 120726 ||||| ||||| || || ||||||||||| || || || ||||||| ||| | |||| Sbjct 1010283 TCGTCTCGCGAGATGAGTTCGTTGCTAAAGGTGAGCCCTGGCATGACCCCTCGCTTCTTC 1010224 Query 120727 ATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGATGGCAAAGGCG 120786 | |||| || || ||||| ||||| ||||| | ||||| || || || ||| Sbjct 1010223 AGCCAGAAGATCGCTGCAAAACTGCCGCTGAAGAAGATACCCTCAACCGCCGCGAACGCG 1010164 Query 120787 ACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCACTTCATGGCCCACTCGGCC 120846 | | || || | || || || ||| | | |||||| |||| ||||| | |||| Sbjct 1010163 ATTACACGTTCAGGAAATGTAGCGCTCTCGTGATTGATCCAGTTCAATGCCCAATTGGCC 1010104 Query 120847 TTTTTGCGCACGCACGGCATCCGCTCGAACGCGTT 120881 || || | ||| || || | | ||||| ||| || Sbjct 1010103 TTCTTTCCCACACAAGGAAGCGTCTCGATCGCATT 1010069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483340685087920