Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq12944 145 1e-28 seq13230 116 5e-20 seq13242 105 1e-16 seq13229 91.5 2e-12 >seq12944 Length=62557 Score = 145 bits (160), Expect = 1e-28 Identities = 172/230 (75%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | |||||||| ||||| |||| || ||| |||| |||| | Sbjct 21112 ATCTACAAGGTGTTGAAGCAGGTCCACCCGGACACCG---GG--ATC-TCCAGCAAGGCG 21165 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || ||||||||| | |||| ||||||| ||||||| | Sbjct 21166 ATGAGCATCATGAACAGCTTCGTCAACGACGTCTTCGAGCGCATCGCGGCCGAGGCGTCT 21225 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||| |||| | || |||||||||| ||||||| |||| ||||||||||| |||||| Sbjct 21226 CGCTTGGCCCACTACAACAAGCGCTCCACGATCACGTCGCGGGAGATCCAGACTGCCGTG 21285 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | || || ||| |||||| ||||| | ||||||||| |||||| || Sbjct 21286 AGGCTTCTCCTGCCCGGCGAGCTGGCGAAGCACGCCGTTAGCGAGGGAAC 21335 >seq13230 Length=2258499 Score = 116 bits (128), Expect = 5e-20 Identities = 167/232 (72%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||| || || || ||||| |||||||| |||| | ||| |||| ||| | Sbjct 486406 ATCTATAAAGTACTGAAGCAAGTGCACCCGGACACCGGT-----ATC-TCCAGCAAAGCT 486353 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| || ||||| |||||||||||| | |||| ||||||| | ||||||| || Sbjct 486352 ATGAGCATAATGAATAGCTTTGTCAACGACGTCTTCGAGCGCATCGCCGCCGAGGC--GT 486295 Query 725031 CGCCT--GGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 ||| | ||| | || |||||| ||| |||||| | || |||||||||||||||| Sbjct 486294 CGCGTTTGGCTCACTACAACAAACGCTCGACGATCACGTCCCGGGAGATCCAGACCGCCG 486235 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | || || | ||| |||||| ||||||| ||||||||| ||| ||||| Sbjct 486234 TCCGACTTCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGAGCGAAGGCAC 486183 >seq13242 Length=2670346 Score = 105 bits (116), Expect = 1e-16 Identities = 160/220 (73%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 1456096 GCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAAC 1456155 || ||||| ||| | || | ||| | || |||||| | ||||| |||| |||||||| Sbjct 1010072 GCGATCGAGACGCTTCCTTGTGTGGGAAAGAAGGCCAATTGGGCATTGAACTGGATCAAT 1010131 Query 1456156 AAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGCG-TCGAGGGCATCT 1456214 | ||| || | ||| ||| | || || | ||| || || ||| | ||||| |||| Sbjct 1010132 CACGAGAGCG-CTACA-TTTCCTGAACGTGTAATCGCGTTCGCGGCGGTTGAGGGTATCT 1010189 Query 1456215 TTTTCTCGGGCAGTTTCTGC-GCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGT 1456273 | ||| |||||||| ||| || ||||| ||||| |||||||| || ||||||| || Sbjct 1010190 TCTTCAGCGGCAGTTT-TGCAGCGATCTTCTGGCTGAAGAAGCGAGGGGTCATGCCAGGG 1010248 Query 1456274 CTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAAGTT 1456313 || | ||||||||||||| | ||| || ||||||||| Sbjct 1010249 CT-CACCTTTAGCAACGAACTCATCTCGCGAGACGAAGTT 1010287 >seq13229 Length=2253397 Score = 91.5 bits (100), Expect = 2e-12 Identities = 146/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 1818069 ATGGTAAAGGGCGTCACGCGCTCGGGAAAGGTGAGCGTCTTGACGATCTCATAGG--GCA 1818126 ||| | |||||||||||| ||||||||| || || | ||| || | | || | ||| Sbjct 2237961 ATGTTGAAGGGCGTCACGATCTCGGGAAACGTCAGATT-TTG-CGCTATACTACGCGGCA 2237904 Query 1818127 CGCCCACCTCGTCAATGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGTAAAGT 1818186 |||| || | || ||| | | ||| || || ||||||| | |||||||| ||||| Sbjct 2237903 CGCCTACTTGATCGATGCGCAGGTTGGGATCCGGCGTGATGACAGTGCGCGCGGAAAAGT 2237844 Query 1818187 TGACGCGCTTGCCCATGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGAACCGCTCCA 1818246 ||||| || ||||| ||| || || ||||| |||||||| ||||| | ||| || Sbjct 2237843 CCACGCGTTTACCCATCAGATTCCCACGAATCCTACCCTCCTTTCCCTTCAGCCGAGCCT 2237784 Query 1818247 CGAGGCCCTTGGTGGGCTTGCCCGAC 1818272 || |||| |||||||||||| Sbjct 2237783 TGATCGCCTTCAGAGGCTTGCCCGAC 2237758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176532441531796