Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq13189 113 6e-20 seq13242 95.1 2e-14 >seq13189 Length=1149699 Score = 113 bits (124), Expect = 6e-20 Identities = 124/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 68955 ATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTA 69014 ||| |||||||||| || | || ||||||| ||| ||||| || || || || ||||| Sbjct 402113 ATACGTTTCATAAGTGCCCTTTTGCTCAGCTAATTCGCAACTAGCTTCCAAGGCGCCGTA 402054 Query 69015 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATA 69074 ||||| ||||||||| || || ||||||| || | |||||| || ||||| ||||| Sbjct 402053 ATAAAGTGTTTCGAAGATTTTTATATTGAGTTCCTTCGCTTCTTTGCTCTCGAAAGGATA 401994 Query 69075 ATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACC 69119 | | || | |||||||||||||| || || | ||| ||||| Sbjct 401993 TCGCATTAGTAGGAATGCATCTGCCAAACCTTGTATCCCGATACC 401949 Score = 91.5 bits (100), Expect = 2e-13 Identities = 223/334 (67%), Gaps = 8/334 (2%) Strand=Plus/Minus Query 69117 ACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAAT 69176 ||| |||||||| ||||| | ||| || ||| | ||| | |||||||| |||| | Sbjct 401880 ACCAATAGGTCTGTGTCTTTGATTAGATGTTTTCGTCTCTTGGATAGGATAGAAATTTAC 401821 Query 69177 ATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAA 69236 || || | ||||| ||||| ||| || | ||| | || ||| ||||| ||| Sbjct 401820 GTCGATGACTTTATCTAGATTGCGGGTGACGATTTTTGCGACTGTCTTAAGTTTATCAAA 401761 Query 69237 ATCAAATCGTC---CATCTA---TAACAAACATATTCAGTGCTACAGATGCTAGATTACA 69290 ||| || | | ||| | || ||||| || | || | ||| |||| ||| || Sbjct 401760 ATCGAAAGTTTTGGCGTCTGCGTTGACGAACATGTTGACAGCGATAGACGCTAAATTGCA 401701 Query 69291 AACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTT 69350 || || ||||| | | | |||||| || | ||| || || | ||| || ||||| Sbjct 401700 TACGGCGACCTCTCCGGGACCGGAATATTGAATAACCTCGGTGCACAAATTGCTGCATTT 401641 Query 69351 GATAGTCCCCAGATTTTGCTGATTACTCTTTTTG-TTACAGGCGTCCTTGTAAAGAATAA 69409 |||||| || | | || ||||| | |||| | |||||| ||| |||||||| ||| Sbjct 401640 GATAGTGCCTACGTGCTGATGATT-CGATTTTCGATTACAGTGGTCTTTGTAAAGCATAT 401582 Query 69410 ACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 | || || |||||||| | || ||| || ||| Sbjct 401581 AAGGCGTTCCAGTTTCCACTTGGGATCTGAGAAT 401548 Score = 89.7 bits (98), Expect = 7e-13 Identities = 99/131 (76%), Gaps = 1/131 (1%) Strand=Plus/Minus Query 69505 GTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGA 69564 ||||| || ||| ||||| || ||||||||||| |||| || ||| |||| | |||| Sbjct 401366 GTATACAGTGTTTCAAATTCCTCGCCCCAAACATCGGCCAAGCCGGGAGATTCGTATGGA 401307 Query 69565 CACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAA 69624 |||||||| ||||| || |||| | | ||||||||||| ||||| || ||||| Sbjct 401306 CACATCAAACTCCACATCTCGTCATTATGCATACGTTTCATAAAAAGATCCGGTATCCAG 401247 Query 69625 AGAGCTATAAA 69635 || || ||||| Sbjct 401246 AG-GCCATAAA 401237 >seq13242 Length=2670346 Score = 95.1 bits (104), Expect = 2e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 39883 AACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTG 39942 || ||| || || || | || | ||||||||| ||||||||||| || ||||| || || Sbjct 1009859 AATATAAGTTTCAATGAGCAAAGAATACATTTCAGAATGGATGTTCTCTATCGCGATTTG 1009800 Query 39943 AAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAA 40002 || ||||| ||||| | |||||| | |||| ||||| || ||||| || | Sbjct 1009799 GAAGCCGTAGAAACAACGTGCTTCGGCGATTTTCACCTCCTGACTGAATCTCTCAATTAG 1009740 Query 40003 ATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATA 40062 ||| ||||| || || || || |||||| || |||||||| | ||| ||||| || Sbjct 1009739 ATTCTCATTAACGATACCGTCGGAAGCGGCGAAGAATGCCAAGATATGAGAGATAAAGTA 1009680 Query 40063 TTTTTCATCG 40072 | | || ||| Sbjct 1009679 TCTCTCGTCG 1009670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686794962039120