Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq13242 93.3 5e-14 seq13027 82.4 9e-11 >seq13242 Length=2670346 Score = 93.3 bits (102), Expect = 5e-14 Identities = 156/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 130037 TCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTC 130096 ||||| || ||||||||||| || ||| || |||||||||| || ||||||||| Sbjct 1010283 TCGTCTCGCGAGATGAGTTCGTTGCTAAAGGTGAGCCCTGGCATGACCCCTCGCTTCTTC 1010224 Query 130097 AACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCA 130156 | |||||| ||||| ||| ||| ||||||||| ||||| || ||||||||| Sbjct 1010223 AGCCAGAAGATCGCTGCAAAACTGCCGCTGAAGAAGATACCCTCAACCGCCGCGAACGCG 1010164 Query 130157 AAGAGACGCTCAGCAAA-GGAGCGGGACT-TTGT-ATCAAACCACTTCATCGCCCACTGC 130213 | | ||| |||| ||| | |||| || | || || | ||| |||| ||||| | Sbjct 1010163 ATTACACGTTCAGGAAATGTAGCG---CTCTCGTGATTGATCCAGTTCAATGCCCAATTG 1010107 Query 130214 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAA 130254 ||||| || | | ||| || | |||| |||||| | ||| Sbjct 1010106 GCCTTCTTTCCCACACAAGGAAGCGTCTCGATCGCATTAAA 1010066 >seq13027 Length=117870 Score = 82.4 bits (90), Expect = 9e-11 Identities = 271/419 (65%), Gaps = 12/419 (3%) Strand=Plus/Plus Query 14015 AAAATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTACGATCAAAGCGA 14074 || || |||||||| || | | ||||| || | || |||| || ||||| ||| Sbjct 82837 AATATTTTCTCGCGCCCATTTATATCGGGTAAAGAAATAGTAATCTGCCGGTCAAAACGA 82896 Query 14075 CCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACG 14134 || || | || || || || | || ||| ||||| || || || || | | Sbjct 82897 CCAGGCCTAAGCAGTGCTGGATCTAAGACATCCGGACGGTTAGTTGCAGCAATTATTATT 82956 Query 14135 ATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGT 14191 | |||| || ||| |||||||||||||||||| || | ||||| | |||||| Sbjct 82957 ACGCCC---TCATTAGACTCAAAGCCATCCATCTCAACTAATAACTGATTTAATGTTTGT 83013 Query 14192 TCGCGTTCATCATTCGCAGGCATACCACCCGCACTGC---GTTGCTTACCGACGGCGTCA 14248 || | ||| ||||| || |||| || ||| | || |||| || || || Sbjct 83014 TCTCTTTCGTCATTACCACC---ACCAAGACCAATGCCACGATGTCTACCCACCGCATCT 83070 Query 14249 ATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGC 14308 || ||||| || |||| ||||| || ||||| | | ||||| ||||| || Sbjct 83071 ATCTCATCTATAAAAATTATACAAGGAGCATTTTTCTTGCCTTGATCAAACATATCACGA 83130 Query 14309 ACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATG 14368 || | | ||||| ||||| ||||||||||| ||||||| || | ||| | | Sbjct 83131 ACACGGCTCGCACCAACACCAACAAACATCTCAACAAAATCGGATCCAGAAATGCTAAAG 83190 Query 14369 AAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 || || || |||| ||| || || || || || || || | || || || || || || Sbjct 83191 AATGGCACATTAGCTTCTCCTGCAATTGCACGAGCAAGTAAAGTTTTACCAGTTCCAGG 83249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618332709826480