Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq13163 170 6e-37 seq12921 159 1e-33 seq13111 109 2e-18 seq13245 100 9e-16 seq13246 93.3 1e-13 >seq13163 Length=1194233 Score = 170 bits (188), Expect = 6e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || |||||||| ||||| || || || || || || || || | |||| || ||| Sbjct 711788 AGGACCAGATGAAGCGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCT 711847 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || ||||| || ||||||||||| |||||||||||||| |||||||| ||||||||||| Sbjct 711848 TCCAGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGGAGGAATACCTTCTTTATCT 711907 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || |||||||| ||||| ||||| | ||||| | ||| || || || || | || Sbjct 711908 TGGATCTTAGCTTTGACATTTTCAATAGTGTCAGAAGCTTCTACCTCGAGGGTGATGGTT 711967 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || ||||| ||||| || ||||| Sbjct 711968 TTTCCAGTGAGAGTTTTCACAAAGATTTGCAT 711999 Score = 147 bits (162), Expect = 7e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 140535 TGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGT 140594 || || ||||| || ||||| |||||||| || || | |||| || ||||| || ||| Sbjct 709851 TGGAGCGTAGATTCCTTTTGGATATTATAGTCGGAAAGAGTTCTGCCGTCTTCCAGCTGT 709910 Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || ||||| ||||||| ||| |||||||| ||||||||||| ||||| ||||| ||||| Sbjct 709911 TTGCCAGCGAAGATTAAACGCTGCTGATCCGGAGGAATTCCCTCTTTGTCCTGGATTTTG 709970 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 || || || || || || | || || | ||| ||||| || || | || || || || Sbjct 709971 GCCTTCACGTTTTCTATGGTGTCGGAAGCTTCGACTTCGAGGGTGATGGTTTTGCCCGTG 710030 Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738 || || ||||| || ||||||||| Sbjct 710031 AGAGTCTTTACGAAGATCTGCATT 710054 >seq12921 Length=52531 Score = 159 bits (176), Expect = 1e-33 Identities = 226/317 (71%), Gaps = 12/317 (4%) Strand=Plus/Minus Query 349577 GCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTT 349636 || ||||| ||| | || || ||||| |||||||| || || || ||||| || || Sbjct 5617 GCAGAAGCTTATCTTGGAGAGGAAGTAAAAGATGCTGTGATAACAGTGCCAGCATACTTC 5558 Query 349637 AATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTA 349696 || || | || ||| |||||||||||||| || | || || || |||||||| || Sbjct 5557 AACGACTCTCAACGTCAAGCAACAAAAGATGCAGGAAAAATCGCCGGATTAAATGTACTC 5498 Query 349697 AGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGAC 349756 ||||| | |||||||| ||||| ||||| |||| ||||| |||||||| | | Sbjct 5497 AGAATAGTAAATGAACCGACTGCCGCAGCGCTTGCTTATGGTCTTGATAAGA------AA 5444 Query 349757 CAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACT- 349815 || | | | || | | | ||| | ||||||||||| |||||||| ||| |||| Sbjct 5443 CATGGGCACACAATAGTGGTGTATGACCTTGGTGGTGGTACATTTGATGTCTCAATACTT 5384 Query 349816 --AACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGT 349873 || | ||||| || |||||||||| || || || |||||| || |||||||| Sbjct 5383 GAAATAGGTGAAGGGG---TTTTTGAAGTAAAGGCTACAAATGGTGACACTCATCTTGGA 5327 Query 349874 GGAGAAGATTTTGATAA 349890 || ||||| |||||||| Sbjct 5326 GGTGAAGACTTTGATAA 5310 Score = 107 bits (118), Expect = 6e-18 Identities = 312/476 (66%), Gaps = 31/476 (7%) Strand=Plus/Minus Query 350173 TCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTT 350232 ||| |||| ||||||||| | |||||||| || ||||| |||||||| | || Sbjct 5015 TCAAATTGGCGAAGTAGTTCTCGTTGGTGGCATGACTCGTATGCCAAAAGTCATAGAGAA 4956 Query 350233 ACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGT 350292 | | || || ||| |||||||| || |||| | | ||||| ||||||| ||| Sbjct 4955 AGTTAAAGAATTCTTT---GGCAAAGATCCACATAGAGGAGTAAATCCTGATGAAGTTGT 4899 Query 350293 TGCATATGGTGCTGCTGTTCAGGC----ATCTATTTTATCTGGAAATAAGAGTTCTAAAA 350348 ||| ||| ||||| || ||||| ||| ||| | || | |||||| Sbjct 4898 AGCAATTGGAGCTGCAGTACAGGCGGGGATC-ATTCAAGGTG-ATGTAAGAG-------- 4849 Query 350349 TTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGATTAGAAACTTCTGGTG 350408 || | |||||||| ||||| ||||||||||| ||||| | |||||| || | Sbjct 4848 ------ATGTGTTACTACTTGATGTGACTCCACTTTCTCTTGGTATTGAAACTCTAGGAG 4795 Query 350409 AAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTACAAAAAAGTCCCAAACTT 350468 |||| | ||| |||||| | |||| |||| | || || ||||| || || | Sbjct 4794 GAGTATTTACTCCACTTATTGAACGTAATACTACTATTCCCACTAAAAAATCTCAGGTGT 4735 Query 350469 TTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGTATTTGAAGGTGAACG-- 350526 |||| || | |||||| || |||| || |||||| | ||| | |||||||| | Sbjct 4734 TTTCAACTGCAGAAGATAACCAAACAGCCGTTACAATTAAGGTACATCAAGGTGAAAGAA 4675 Query 350527 TGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCT--AAGTGAAATTCCACCA 350584 | || | || || || |||||| | |||| | ||| | || || || Sbjct 4674 AATTGGCGGT--TGACAACAAGTTACTTGGTCAGTTTAGTTTGGAAGGG--ATACCTCCT 4619 Query 350585 ATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATTCAAATGGTAT 350640 ||| | |||||||||||||| ||||| | || || || ||| ||||||| || Sbjct 4618 GCTCCTCGTGGAGTTCCTCAGATCGAAGTAACATTTGACATAGATGCAAATGGAAT 4563 >seq13111 Length=348602 Score = 109 bits (120), Expect = 2e-18 Identities = 263/393 (67%), Gaps = 4/393 (1%) Strand=Plus/Minus Query 349503 AATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTT 349561 |||| ||||| || || || || || || ||||||||| | || ||||| | || Sbjct 228728 AATACAAAGGAGAGACGAAGACT-TTCTTCCCCGAAGAAGTGAGTTCGATGGTCCTGGTA 228670 Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 ||||||||||| | || || || || | || | || || || | || || || || Sbjct 228669 AAAATGAAGGAGACCGCGGAGGCGTACCTGGGCAAGACCGTGACCAACGCCGTGATCACC 228610 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || || || || || || || | |||||| ||||| || || ||||| | ||| || Sbjct 228609 GTCCCCGCTTACTTCAACGACTCGCAGCGTCAGGCAACCAAGGACGCTGGTACCATCTCG 228550 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || || ||||| || | || ||||| || ||||| || || || || || || || || Sbjct 228549 GGCTTGAATGTACTGCGTATCATTAACGAGCCCACCGCCGCCGCGATCGCGTACGGCCTC 228490 Query 349742 GATAAAATGAGTGACC-AAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTT 349800 || || | | | ||| || || | || || |||||| | |||||||| || || Sbjct 228489 GACAAGAAG-GCCACCGGCGAGCGGAACGTCCTGATCTTTGATCTCGGTGGTGGCACCTT 228431 Query 349801 TGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGA 349860 || || || | || || | ||||| || ||||| || || || | || || || || Sbjct 228430 CGACGTGTCCATCCTGACCATCGAAGATGGTATTTTCGAGGTCAAGTCCACCGCCGGCGA 228371 Query 349861 TACACATCTTGGTGGAGAAGATTTTGATAATCG 349893 || ||||| || || || || || || || || Sbjct 228370 CACCCATCTCGGCGGCGAGGACTTCGACAACCG 228338 >seq13245 Length=2836997 Score = 100 bits (110), Expect = 9e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 140548 CTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGA 140607 |||| || || || || || || | ||| || ||||| || || ||||| || || |||| Sbjct 675195 CTTTCTGTATGTTGTAGTCGGAGAGTGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGA 675136 Query 140608 TTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTAT 140667 | || || ||||||||||| || || || || || ||||| || || || || || || | Sbjct 675135 TGAGCCGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCT 675076 Query 140668 CAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAA 140727 | || | ||| || | || || || || || | ||||| || || || || || || | Sbjct 675075 CGATAGTATCGGACGCCTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 675016 Query 140728 AAATCTGCAT 140737 | |||||||| Sbjct 675015 AGATCTGCAT 675006 >seq13246 Length=2934203 Score = 93.3 bits (102), Expect = 1e-13 Identities = 129/180 (72%), Gaps = 8/180 (4%) Strand=Plus/Plus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAA----CAGTAACTGATGCTGTTAT 349617 ||||||||||||| |||| || ||||| ||| |||| | |||| ||||| Sbjct 800982 AAAATGAAGGAAACCGCTGCGGCTTATTT----GAACACTTCAGTGAAGAATGCCGTTAT 801037 Query 349618 TACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCAT 349677 ||||||||||||||||||||| || | || || || ||||| |||||||| || Sbjct 801038 TACTGTACCAGCCTATTTTAACGACTCACAACGACAGGCGACAAAGGATGCTGGTCAAAT 801097 Query 349678 TGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGG 349737 ||| || || ||||| ||| | | |||||||| || || || || || |||| || || Sbjct 801098 TGCCGGATTGAATGTACTACGTGTAATTAATGAGCCAACCGCAGCTGCGCTTGCTTACGG 801157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514997006576174