Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq13163 159 4e-34 seq13245 107 2e-18 >seq13163 Length=1194233 Score = 159 bits (176), Expect = 4e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || || ||||| || || || || || || || | Sbjct 710054 AATGCAGATCTTCGTAAAGACTCTCACGGGCAAAACCATCACCCTCGAAGTCGAAGCTTC 709995 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | ||| ||||||| ||||| |||||||| |||||||||||||| || || Sbjct 709994 CGACACCATAGAAAACGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCTCCGGATCA 709935 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||| |||| || ||||| || || || || || | | || || | |||||||| Sbjct 709934 GCAGCGTTTAATCTTCGCTGGCAAACAGCTGGAAGACGGCAGAACTCTTTCCGACTATAA 709875 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||||||||||| || || || |||| ||||| |||||||| || Sbjct 709874 TATCCAAAAGGAATCTACGCTCCACTTAGTTTTGCGACTTCGCGGAGG 709827 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| || || || || || || || || || || ||||| || | | Sbjct 711999 ATGCAAATCTTTGTGAAAACTCTCACTGGAAAAACCATCACCCTCGAGGTAGAAGCTTCT 711940 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | || ||||| || || || || || || |||||||| || ||| Sbjct 711939 GACACTATTGAAAATGTCAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCGGATCAG 711880 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || |||||||| |||||||| || || | | ||||| | ||||| || Sbjct 711879 CAACGTCTGATCTTTGCTGGCAAGCAACTGGAAGACGGCAGAACCCTTTCCGACTACAAC 711820 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| |||||||| || |||||||| ||| ||||||| ||||| ||| Sbjct 711819 ATCCAGAAGGAATCTACGCTTCATCTGGTCCTGCGTCTCCGCGGAGGA 711772 Score = 120 bits (132), Expect = 3e-22 Identities = 140/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || || ||||| || || || || || || || | Sbjct 711772 AATGCAGATCTTCGTAAAGACTCTAACGGGCAAAACCATCACCCTGGAAGTCGAAGCTTC 711713 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| ||| ||||||| ||||| |||||||| ||||| ||||| || || || Sbjct 711712 GGACACCATTGAAAACGTGAAGGCCAAAATCCAGGACAAAGAGGGGATTCCCCCGGATCA 711653 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| | ||||| || || ||||||||||| |||| | || || ||||||| || Sbjct 711652 ACAGCGTTTGATTTTCGCCGGCAAGCAACTCGAAGATGGCAGGACTCTTTCAGACTACAA 711593 Query 27585 TGTCCAAAA 27593 |||| || Sbjct 711592 CATCCAGAA 711584 >seq13245 Length=2836997 Score = 107 bits (118), Expect = 2e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| || || || ||||| ||| | Sbjct 675006 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTGGAGGCGTCC 675065 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | || | ||||| || || |||||||||||||| || || || || ||| Sbjct 675066 GATACTATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCAG 675125 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||| || || || || || || || || ||||||| || || || | ||||| || Sbjct 675126 CAGCGGCTCATCTTCGCCGGCAAACAGCTGGAGGATGGACGCACACTCTCCGACTACAA 675184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570215885308960