Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq13163 109 3e-19 >seq13163 Length=1194233 Score = 109 bits (120), Expect = 3e-19 Identities = 166/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || | ||| ||||| || || ||||| || |||||||| || ||||| || | Sbjct 709825 CGCCTCCGCGAAGTCGCAAAACTAAGTGGAGCGTAGATTCCTTTTGGATATTATAGTCGG 709884 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 |||| |||| ||||||| || ||||| || || || ||||||||||| || ||||| | Sbjct 709885 AAAGAGTTCTGCCGTCTTCCAGCTGTTTGCCAGCGAAGATTAAACGCTGCTGATCCGGAG 709944 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTC-TTCGCTCTC 34655 | | |||||| ||||| ||| ||| | || ||| | || ||||| ||| || Sbjct 709945 GAATTCCCTCTTTGTCCTGGAT-TTTGGCCTTCACGTTTTCTATGGTGTCGGAAGCT-TC 710002 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | ||| || ||||| || || | || || || || |||||||| Sbjct 710003 GACTTCGAGGGTGATGGTTTTGCCCGTGAGAGTCTTTACGAAGATCTGCAT 710053 Score = 100 bits (110), Expect = 2e-16 Identities = 158/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| |||| ||| || || ||||| || ||||| || || ||||| |||| Sbjct 711782 AGACGCAGGACCAGATGAAGCGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTG 711841 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| ||||| || || ||||| || | ||| || || ||||| || | || || Sbjct 711842 CCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGGAGGAATACCTTCT 711901 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTC-GCTCTCCACTTCCACGGT 34667 || ||| |||||| ||| | | ||| ||||| ||| || || || | ||| Sbjct 711902 TTATCTTGGATCTTAGCTTTGACATTTTCAATAGTGTCAGAAGCT-TCTACCTCGAGGGT 711960 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 || ||||| || || | ||||||||||| || |||||||||| Sbjct 711961 GATGGTTTTTCCAGTGAGAGTTTTCACAAAGATTTGCATGTTGA 712004 Score = 95.1 bits (104), Expect = 8e-15 Identities = 138/190 (73%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 34519 TTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATT 34578 || || ||||| || |||||||| || | | ||||| ||||| || ||||| || || Sbjct 711584 TTCTGGATGTTGTAGTCTGAAAGAGTCCTGCCATCTTCGAGTTGCTTGCCGGCGAAAATC 711643 Query 34579 AAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAA 34637 ||||||||||| ||||| || | ||||| ||||| ||| ||| | || ||| | Sbjct 711644 AAACGCTGTTGATCCGGGGGAATCCCCTCTTTGTCCTGGAT-TTTGGCCTTCACGTTTTC 711702 Query 34638 AATTGTGT-CTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAA 34696 ||| |||| | ||| || ||||||| ||| || ||||| || |||| || || || | Sbjct 711703 AATGGTGTCCGAAGCT-TCGACTTCCAGGGTGATGGTTTTGCCCGTTAGAGTCTTTACGA 711761 Query 34697 AAATCTGCAT 34706 | |||||||| Sbjct 711762 AGATCTGCAT 711771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314678745401114