Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq13163 136 3e-27 seq13245 102 7e-17 seq13171 84.2 2e-11 >seq13163 Length=1194233 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || ||||| ||||| || ||||| | || || || ||||| ||| | ||| Sbjct 710053 ATGCAGATCTTCGTAAAGACTCTCACGGGCAAAACCATCACCCTCGAAGTCGAAGCTTCC 709994 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || ||||| || |||||||| || || || || ||||| Sbjct 709993 GACACCATAGAAAACGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCTCCGGATCAG 709934 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||||||||| | ||| |||||||| |||||||| | || ||||||| || || Sbjct 709933 CAGCGTTTAATCTTCGCTGGCAAACAGCTGGAAGACGGCAGAACTCTTTCCGACTATAAT 709874 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || |||||||| || || | || || |||||||| | || || ||| Sbjct 709873 ATCCAAAAGGAATCTACGCTCCACTTAGTTTTGCGACTTCGCGGAGGC 709826 Score = 118 bits (130), Expect = 9e-22 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || ||||| ||||| || ||||| | || || || ||||| ||| | || Sbjct 711771 ATGCAGATCTTCGTAAAGACTCTAACGGGCAAAACCATCACCCTGGAAGTCGAAGCTTCG 711712 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || ||||| || |||||||| || || || || |||||| Sbjct 711711 GACACCATTGAAAACGTGAAGGCCAAAATCCAGGACAAAGAGGGGATTCCCCCGGATCAA 711652 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||||||||| ||| | ||||| | ||| |||| || |||||| Sbjct 711651 CAGCGTTTGATTTTCGCCGGCAAGCAACTCGAAGATGGCAGGACTCTTTCAGACTACAAC 711592 Query 27168 ATTCAAAA 27175 || || || Sbjct 711591 ATCCAGAA 711584 >seq13245 Length=2836997 Score = 102 bits (112), Expect = 7e-17 Identities = 139/193 (72%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| || || || || || || |||||| | || || || || ||||| ||| Sbjct 675004 CCATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTGGAGGCGT 675063 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 |||| | || |||| ||||| || || || ||||| || ||||| || || |||| Sbjct 675064 CCGATACTATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCTGATC 675123 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | ||||| | || | |||||||||||| |||| || | || | ||||| |||| Sbjct 675124 AGCAGCGGCTCATCTTCGCCGGCAAACAGCTGGAGGATGGACGCACACTCTCCGACTACA 675183 Query 27166 ACATTCA-AAAGG 27177 |||| || ||||| Sbjct 675184 ACATACAGAAAGG 675196 >seq13171 Length=910560 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 49818 ATACGCACCCGGTAAAAGACATTGGTTGAAAATTAAAAAAGACTACTTGTGCGATGGCGC 49877 ||||| || || |||||||| |||||||| | ||||| ||||| |||||| || || Sbjct 197454 ATACGAGCCGGGCAAAAGACACTGGTTGAAGGTAAAAAAGGACTATCTGTGCGGCGGTGC 197395 Query 49878 CATGGCCGATAGCGTTGATTTGGTGGTTTTGGGTGCATGGTACGGTTCTGGAAAAAAGGG 49937 ||||| ||||||| ||| | || || | |||||||||||||| | || || || || Sbjct 197394 GATGGCTGATAGCGCAGATCTCGTCGTGCTTGGTGCATGGTACGGCACAGGCAACAAAGG 197335 Query 49938 T 49938 | Sbjct 197334 T 197334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434846323148160