Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06]
13,258 sequences; 287,900,827 total letters
Query= NC_028799.1
Length=66708
Score E
Sequences producing significant alignments: (Bits) Value
seq12202 181 5e-41
seq8126 150 8e-32
seq9795 143 1e-29
seq7953 102 3e-17
>seq12202
Length=11894
Score = 181 bits (200), Expect = 5e-41
Identities = 651/989 (66%), Gaps = 48/989 (5%)
Strand=Plus/Minus
Query 59768 GGTTTCCAAATCTTCATTAAACTCAACATAGAAATAGTATCTATAAAGTCATCATGTTTA 59827
|| ||||||| ||||| | ||||||| ||| ||||| |||||||| ||||| ||
Sbjct 8827 GGCTTCCAAACCTTCAGACATGACAACATACTAATCGTATCAATAAAGTCGTCATGCTTT 8768
Query 59828 GATTTAAAACCA-CTACGTGAAACCAATGATAATTCATTATGAGCTTCTACCATTGCAGG 59886
|||||||| || |||| | | ||||| | |||| |||||| | |||
Sbjct 8767 GATTTAAAGCCTTCTACA-GTAGCCAATCGAAGCTCATCCATAGCTTCCAACATAATCTT 8709
Query 59887 ATGTTCAGACATATCTTCAGGGAAGTATATCATTCTTTGTTTGAACCAAGGTAATAC--A 59944
| || || ||||||||||| | | | | | |||||||||||||||||| |
Sbjct 8708 CTCATCCTTCAGTTCTTCAGGGAAAAAGAACTTACCAGCTTTGAACCAAGGTAATACTGA 8649
Query 59945 GTTAAAAATCTAGTAAACTTCTGGTTCGTAGGTCTTATGCCCGGCTTATTATTGTTACCT 60004
||| ||||| | ||| | | | ||||||| || || || || |||||||| |||
Sbjct 8648 GTT--GAATCTCACCATCTTATTGGTATTAGGTCTGATACCTGGTTTGTTATTGTTTCCT 8591
Query 60005 TCTGAAGCAATATTGAAGAAGATATTCTTATCCATCATCATAG--ATTTGATAAGAGATA 60062
|| ||||||| || || |||| ||| | | ||||||| | | | | | || ||| |
Sbjct 8590 TCAGAAGCAAAGTTAAACCAGATGTTCCTGTTCATCATC-TCGTCACGTAACAA-AGAGA 8533
Query 60063 CAAATCCACCTTGTTGACCAGTAACTTCTATACCTACATCAAT-TGGTT--TATATATCT 60119
|||||||| ||||||||||||||||| ||||| || | | | |||| || | ||
Sbjct 8532 TGAATCCACCCTGTTGACCAGTAACTTCAATACCAAC-TGACTGAGGTTGGTACTCAACT 8474
Query 60120 GAACCAATCTAAATAAATCTTCAATAGTTACATCT--ATGGTTTGTCTCTTACAAATACC 60177
|| | |||||| | || |||| |||| | | | || ||| | ||| |||||
Sbjct 8473 --ACTAGTCTAAAGAGGTCATCAA-AGTT-CTTGTTCATCAATTGACGACGACAGATACC 8418
Query 60178 ATCAACCCAATAGAAGTAACCTTTATTATTTACTGCCCACACAGATATTACACTAAAGTC 60237
||||||||| | | | ||| || |||| | |||||| ||||| || || | ||||
Sbjct 8417 ATCAACCCAGAACCAATCACCATTGCTATTGATTGCCCATACAGAAATAACTGAATAGTC 8358
Query 60238 AGCTTGTTTCTTTTCACTAGTGGCAAAGTCAGTAGTAATATAAATATTAAAGTTACCTAA 60297
|||| || ||| || ||||| || |||||||| || ||||| | ||||| |||||
Sbjct 8357 AGCTGATTGCTTCTCGCTAGTAGCGAAGTCAGTGGTGATATAGAAGTTAAACATACCTCT 8298
Query 60298 GTTTCGGATTACATCCGACCTCACAAAGTATTGAATATCCCCTT---GTTCAATTAACTT 60354
||| | | | | | | | | |||| ||||| || || || | | |
Sbjct 8297 GTTCAGTAAAAGAGACTTACGCTTGTACCATTGGATATCAGATTCCAGTACA---AGCCT 8241
Query 60355 ATCTTCTTCGGGCATAATACGTAACATTAACTCTTGGTTAAATGCATCTAACTTATGTAA 60414
||||| || | |||| | ||||| | || || || |||||| | || | | |
Sbjct 8240 CTCTTCATCAGAGGTAATCCTCAACATCAGTTCCTGATTGAATGCAGC-CACCTGTCCAG 8182
Query 60415 TCCTTTCATC-TTGTTATAGAGTTTTAGAATAGAATCATAATCAAAACGATCTTCCCAAC 60473
| | || | || ||| | | || | ||||| || || |||||||||
Sbjct 8181 TAGCTACAGCAAGGTCATATTGGCTCTTAACGAAGTCATATGAGAAGCGGTCTTCCCAAG 8122
Query 60474 TACCTCTAAACTCTTCTCTACTACAAGGAAATGTTTCACATACTGGATATACGTTTACTG 60533
|||| ||| |||||||| |||||| ||| | ||||| | || ||||||| ||
Sbjct 8121 CACCTACAAAGTCTTCTCTCGCACAAGGGAATTTCTCACAAATGGGGAATACGTTGACGT 8062
Query 60534 CCCAAGCACCAGATTCAACTGCTTTATACA----ATGGGTCACTTGCATTAAATGGGGTA 60589
|||| |||| ||||| ||||||| ||| | || | | |||| ||||| || ||
Sbjct 8061 ACCAACCACCTGATTCCACTGCTTCATAAAGAATATCGTT--CTTG--TTAAAGGGTGTG 8006
Query 60590 C--CTGACCAAATTACTTTTCTCTTGTTTGGGTGCAATGCAAATTCAATAGCATTGTATA 60647
| |||| ||| | ||||| | |||| ||| ||| | |||| | | |||||||
Sbjct 8005 CCACTGA--AAACAATCTTTCTACGAGTAGGGTCCAAAGCATAATCAACACCTTTGTATA 7948
Query 60648 CAGTCTCTTCAATAGCTT---TAATT-ACTGTAGGTGAACGTGCATCTTTATCACTAACC 60703
|||| || | || || | || || ||| ||| | | ||||| | |||||||||
Sbjct 7947 CAGTATCCTTGATGGCCTGCATAGTTGACT-TAGATTTA---GCATCATCATCACTAACG 7892
Query 60704 AAGTCATCCAATAAAGCTAATACTGGTCG 60732
| ||||||||| | ||| || || || ||
Sbjct 7891 AGGTCATCCAACACAGCCAAAACAGGACG 7863
>seq8126
Length=2631
Score = 150 bits (166), Expect = 8e-32
Identities = 256/366 (70%), Gaps = 4/366 (1%)
Strand=Plus/Minus
Query 53964 TTGTGCTTGTGGTGATGGTTCAGGATTATATTTACTAATCATCTTAGATAAATCTGGCAT 54023
|||||| |||| |||| ||| | |||||| ||| |||| ||| || |||||
Sbjct 757 TTGTGCGAGTGGGTCAGGTTGAGGCTGATATTTCTCAATTCGTTTAGCTAAGTCAGGCAT 698
Query 54024 ACCACGTAGCTTAGCAATTTCACCCAATATAAGTTTTGTCATATCAAATGGCAAGCTTTG 54083
| | || |||||| |||| |||| | | | ||| || ||||||| || |
Sbjct 697 ATTTCTCAGTCGAGCAATATCACTTAATACCATCTGAGACATTTCGAATGGCAGACTATT 638
Query 54084 ACCCATAGTTTGAAGCATAAAACTAAGTTCTTGAGCCTTAATTGCATCAGTTTCTGCGTT 54143
||||||||| |||||||| || | ||||| || || ||| | ||| || |
Sbjct 637 ACCCATAGTCTGAAGCATGAATGCCAACTCTTGTGCTTTCTGGTTATCTGCTTCAGCAGT 578
Query 54144 AGAAATACTTAATTTAATATCAAATGAACCAACTAAGTTATCTCTATTAATCTG-TACAA 54202
|||||||||||| |||| ||||| ||| |||| | ||||||| || ||| ||| |
Sbjct 577 AGAAATACTTAACTTAAGGTCAAAGTTTCCAGCTAATTCATCTCTACGAA-CTGATACGA 519
Query 54203 ACTCTTCATCAGTGATACGAATTACTTCTTCATCGGATAACCAGACAGAATTCATAGCTA 54262
| || |||| |||||| || | |||||||| || ||||| | ||| |||||||| ||
Sbjct 518 AATCATCATTAGTGATTCGTACAACTTCTTCTTCAGATAAGAACTCAGCATTCATAGATA 459
Query 54263 GAATCTTCTTAGCTACT-TCAGTTAATCCATTAGCTAATCTACGAAGAATACCTAATTCA 54321
|| ||| |||| | | || | || | ||| ||||||||||||||||||||||||
Sbjct 458 CAAACTT-ATAGCCAATATCCACAATGCCTTGAGCCAATCTACGAAGAATACCTAATTCA 400
Query 54322 CGTTTA 54327
||||||
Sbjct 399 CGTTTA 394
>seq9795
Length=3651
Score = 143 bits (158), Expect = 1e-29
Identities = 186/254 (73%), Gaps = 11/254 (4%)
Strand=Plus/Plus
Query 51795 ACTCAGAGAAGAAACCAAGACGATATGCAGTACCTTCTAGTTCTAGACGAGTAAAACCAA 51854
||||| |||||||||| | | ||| |||| || | | ||| || |||||||
Sbjct 3396 ACTCATAGAAGAAACCGAATTTCTTGATAGTGCCTTGCAGCTGAATACGGGTGAAACCAA 3455
Query 51855 CACGGTTTACACGGCCACCAATCTCAGTAAGAGTAGGTAGTTTACCTTCAATGATACCAA 51914
| ||||| ||||| |||||| ||||||| |||| || |||||| | ||| ||||||
Sbjct 3456 CGCGGTTAACACGACCACCATTCTCAGTCAGAGCTGGCAGTTTAGATGGGATGGTACCAA 3515
Query 51915 TGTCTTTACTTGAGCCATACAGGTTACCAGAACCAGCAGCAGTAGAAGCTACACCAGCAG 51974
||||||| || || |||||||||||||| |||| |||| |||||||||
Sbjct 3516 TGTCTTTGCTAGAACCATACAGGTTACC---GTTAGCAATGGTAG------CACCAGCAG 3566
Query 51975 CATTAATACCTTGTGTTGAT-ACGTTACGATCATCCAACAGAGGCATATAGTGATGTTTC 52033
||| ||||||||| || | | |||||||| ||||||| ||| || || ||||||| |
Sbjct 3567 CATCAATACCTTG-GTCGTTGACGTTACGGTCATCCAGCAGTGGGATGTAGTGATACAGC 3625
Query 52034 TTAATCTTCTTACC 52047
||||| |||||||
Sbjct 3626 TTAATGGTCTTACC 3639
>seq7953
Length=2551
Score = 102 bits (112), Expect = 3e-17
Identities = 98/126 (78%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 55528 AATGGTTCACTTAAAGCTGAATATCTCCACTCTGCTTGCTTACGGATAAGCTTAGGTTGT 55587
||||||||| | | |||||| |||||||| || ||||||||||| |||||| ||||||||
Sbjct 1867 AATGGTTCAGTAAGAGCTGAGTATCTCCATTCAGCTTGCTTACGAATAAGCATAGGTTGT 1808
Query 55588 ACAGAACTTCTACCTACTTGTTGCTTAGGTTTATAAGCACCAGTTACATTTAACTGAGCT 55647
|| ||| ||||| | | |||||||||| | |||||| ||||||| | | ||
Sbjct 1807 ACTGAAGACCTACCCGGTAACTTCTTAGGTTTAGCGGAACCAGTAACATTTAGGTTATCT 1748
Query 55648 AACCAA 55653
||||||
Sbjct 1747 AACCAA 1742
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 213306327993522
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |