Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_028799.1 Length=66708 Score E Sequences producing significant alignments: (Bits) Value seq12202 181 5e-41 seq8126 150 8e-32 seq9795 143 1e-29 seq7953 102 3e-17 >seq12202 Length=11894 Score = 181 bits (200), Expect = 5e-41 Identities = 651/989 (66%), Gaps = 48/989 (5%) Strand=Plus/Minus Query 59768 GGTTTCCAAATCTTCATTAAACTCAACATAGAAATAGTATCTATAAAGTCATCATGTTTA 59827 || ||||||| ||||| | ||||||| ||| ||||| |||||||| ||||| || Sbjct 8827 GGCTTCCAAACCTTCAGACATGACAACATACTAATCGTATCAATAAAGTCGTCATGCTTT 8768 Query 59828 GATTTAAAACCA-CTACGTGAAACCAATGATAATTCATTATGAGCTTCTACCATTGCAGG 59886 |||||||| || |||| | | ||||| | |||| |||||| | ||| Sbjct 8767 GATTTAAAGCCTTCTACA-GTAGCCAATCGAAGCTCATCCATAGCTTCCAACATAATCTT 8709 Query 59887 ATGTTCAGACATATCTTCAGGGAAGTATATCATTCTTTGTTTGAACCAAGGTAATAC--A 59944 | || || ||||||||||| | | | | | |||||||||||||||||| | Sbjct 8708 CTCATCCTTCAGTTCTTCAGGGAAAAAGAACTTACCAGCTTTGAACCAAGGTAATACTGA 8649 Query 59945 GTTAAAAATCTAGTAAACTTCTGGTTCGTAGGTCTTATGCCCGGCTTATTATTGTTACCT 60004 ||| ||||| | ||| | | | ||||||| || || || || |||||||| ||| Sbjct 8648 GTT--GAATCTCACCATCTTATTGGTATTAGGTCTGATACCTGGTTTGTTATTGTTTCCT 8591 Query 60005 TCTGAAGCAATATTGAAGAAGATATTCTTATCCATCATCATAG--ATTTGATAAGAGATA 60062 || ||||||| || || |||| ||| | | ||||||| | | | | | || ||| | Sbjct 8590 TCAGAAGCAAAGTTAAACCAGATGTTCCTGTTCATCATC-TCGTCACGTAACAA-AGAGA 8533 Query 60063 CAAATCCACCTTGTTGACCAGTAACTTCTATACCTACATCAAT-TGGTT--TATATATCT 60119 |||||||| ||||||||||||||||| ||||| || | | | |||| || | || Sbjct 8532 TGAATCCACCCTGTTGACCAGTAACTTCAATACCAAC-TGACTGAGGTTGGTACTCAACT 8474 Query 60120 GAACCAATCTAAATAAATCTTCAATAGTTACATCT--ATGGTTTGTCTCTTACAAATACC 60177 || | |||||| | || |||| |||| | | | || ||| | ||| ||||| Sbjct 8473 --ACTAGTCTAAAGAGGTCATCAA-AGTT-CTTGTTCATCAATTGACGACGACAGATACC 8418 Query 60178 ATCAACCCAATAGAAGTAACCTTTATTATTTACTGCCCACACAGATATTACACTAAAGTC 60237 ||||||||| | | | ||| || |||| | |||||| ||||| || || | |||| Sbjct 8417 ATCAACCCAGAACCAATCACCATTGCTATTGATTGCCCATACAGAAATAACTGAATAGTC 8358 Query 60238 AGCTTGTTTCTTTTCACTAGTGGCAAAGTCAGTAGTAATATAAATATTAAAGTTACCTAA 60297 |||| || ||| || ||||| || |||||||| || ||||| | ||||| ||||| Sbjct 8357 AGCTGATTGCTTCTCGCTAGTAGCGAAGTCAGTGGTGATATAGAAGTTAAACATACCTCT 8298 Query 60298 GTTTCGGATTACATCCGACCTCACAAAGTATTGAATATCCCCTT---GTTCAATTAACTT 60354 ||| | | | | | | | | |||| ||||| || || || | | | Sbjct 8297 GTTCAGTAAAAGAGACTTACGCTTGTACCATTGGATATCAGATTCCAGTACA---AGCCT 8241 Query 60355 ATCTTCTTCGGGCATAATACGTAACATTAACTCTTGGTTAAATGCATCTAACTTATGTAA 60414 ||||| || | |||| | ||||| | || || || |||||| | || | | | Sbjct 8240 CTCTTCATCAGAGGTAATCCTCAACATCAGTTCCTGATTGAATGCAGC-CACCTGTCCAG 8182 Query 60415 TCCTTTCATC-TTGTTATAGAGTTTTAGAATAGAATCATAATCAAAACGATCTTCCCAAC 60473 | | || | || ||| | | || | ||||| || || ||||||||| Sbjct 8181 TAGCTACAGCAAGGTCATATTGGCTCTTAACGAAGTCATATGAGAAGCGGTCTTCCCAAG 8122 Query 60474 TACCTCTAAACTCTTCTCTACTACAAGGAAATGTTTCACATACTGGATATACGTTTACTG 60533 |||| ||| |||||||| |||||| ||| | ||||| | || ||||||| || Sbjct 8121 CACCTACAAAGTCTTCTCTCGCACAAGGGAATTTCTCACAAATGGGGAATACGTTGACGT 8062 Query 60534 CCCAAGCACCAGATTCAACTGCTTTATACA----ATGGGTCACTTGCATTAAATGGGGTA 60589 |||| |||| ||||| ||||||| ||| | || | | |||| ||||| || || Sbjct 8061 ACCAACCACCTGATTCCACTGCTTCATAAAGAATATCGTT--CTTG--TTAAAGGGTGTG 8006 Query 60590 C--CTGACCAAATTACTTTTCTCTTGTTTGGGTGCAATGCAAATTCAATAGCATTGTATA 60647 | |||| ||| | ||||| | |||| ||| ||| | |||| | | ||||||| Sbjct 8005 CCACTGA--AAACAATCTTTCTACGAGTAGGGTCCAAAGCATAATCAACACCTTTGTATA 7948 Query 60648 CAGTCTCTTCAATAGCTT---TAATT-ACTGTAGGTGAACGTGCATCTTTATCACTAACC 60703 |||| || | || || | || || ||| ||| | | ||||| | ||||||||| Sbjct 7947 CAGTATCCTTGATGGCCTGCATAGTTGACT-TAGATTTA---GCATCATCATCACTAACG 7892 Query 60704 AAGTCATCCAATAAAGCTAATACTGGTCG 60732 | ||||||||| | ||| || || || || Sbjct 7891 AGGTCATCCAACACAGCCAAAACAGGACG 7863 >seq8126 Length=2631 Score = 150 bits (166), Expect = 8e-32 Identities = 256/366 (70%), Gaps = 4/366 (1%) Strand=Plus/Minus Query 53964 TTGTGCTTGTGGTGATGGTTCAGGATTATATTTACTAATCATCTTAGATAAATCTGGCAT 54023 |||||| |||| |||| ||| | |||||| ||| |||| ||| || ||||| Sbjct 757 TTGTGCGAGTGGGTCAGGTTGAGGCTGATATTTCTCAATTCGTTTAGCTAAGTCAGGCAT 698 Query 54024 ACCACGTAGCTTAGCAATTTCACCCAATATAAGTTTTGTCATATCAAATGGCAAGCTTTG 54083 | | || |||||| |||| |||| | | | ||| || ||||||| || | Sbjct 697 ATTTCTCAGTCGAGCAATATCACTTAATACCATCTGAGACATTTCGAATGGCAGACTATT 638 Query 54084 ACCCATAGTTTGAAGCATAAAACTAAGTTCTTGAGCCTTAATTGCATCAGTTTCTGCGTT 54143 ||||||||| |||||||| || | ||||| || || ||| | ||| || | Sbjct 637 ACCCATAGTCTGAAGCATGAATGCCAACTCTTGTGCTTTCTGGTTATCTGCTTCAGCAGT 578 Query 54144 AGAAATACTTAATTTAATATCAAATGAACCAACTAAGTTATCTCTATTAATCTG-TACAA 54202 |||||||||||| |||| ||||| ||| |||| | ||||||| || ||| ||| | Sbjct 577 AGAAATACTTAACTTAAGGTCAAAGTTTCCAGCTAATTCATCTCTACGAA-CTGATACGA 519 Query 54203 ACTCTTCATCAGTGATACGAATTACTTCTTCATCGGATAACCAGACAGAATTCATAGCTA 54262 | || |||| |||||| || | |||||||| || ||||| | ||| |||||||| || Sbjct 518 AATCATCATTAGTGATTCGTACAACTTCTTCTTCAGATAAGAACTCAGCATTCATAGATA 459 Query 54263 GAATCTTCTTAGCTACT-TCAGTTAATCCATTAGCTAATCTACGAAGAATACCTAATTCA 54321 || ||| |||| | | || | || | ||| |||||||||||||||||||||||| Sbjct 458 CAAACTT-ATAGCCAATATCCACAATGCCTTGAGCCAATCTACGAAGAATACCTAATTCA 400 Query 54322 CGTTTA 54327 |||||| Sbjct 399 CGTTTA 394 >seq9795 Length=3651 Score = 143 bits (158), Expect = 1e-29 Identities = 186/254 (73%), Gaps = 11/254 (4%) Strand=Plus/Plus Query 51795 ACTCAGAGAAGAAACCAAGACGATATGCAGTACCTTCTAGTTCTAGACGAGTAAAACCAA 51854 ||||| |||||||||| | | ||| |||| || | | ||| || ||||||| Sbjct 3396 ACTCATAGAAGAAACCGAATTTCTTGATAGTGCCTTGCAGCTGAATACGGGTGAAACCAA 3455 Query 51855 CACGGTTTACACGGCCACCAATCTCAGTAAGAGTAGGTAGTTTACCTTCAATGATACCAA 51914 | ||||| ||||| |||||| ||||||| |||| || |||||| | ||| |||||| Sbjct 3456 CGCGGTTAACACGACCACCATTCTCAGTCAGAGCTGGCAGTTTAGATGGGATGGTACCAA 3515 Query 51915 TGTCTTTACTTGAGCCATACAGGTTACCAGAACCAGCAGCAGTAGAAGCTACACCAGCAG 51974 ||||||| || || |||||||||||||| |||| |||| ||||||||| Sbjct 3516 TGTCTTTGCTAGAACCATACAGGTTACC---GTTAGCAATGGTAG------CACCAGCAG 3566 Query 51975 CATTAATACCTTGTGTTGAT-ACGTTACGATCATCCAACAGAGGCATATAGTGATGTTTC 52033 ||| ||||||||| || | | |||||||| ||||||| ||| || || ||||||| | Sbjct 3567 CATCAATACCTTG-GTCGTTGACGTTACGGTCATCCAGCAGTGGGATGTAGTGATACAGC 3625 Query 52034 TTAATCTTCTTACC 52047 ||||| ||||||| Sbjct 3626 TTAATGGTCTTACC 3639 >seq7953 Length=2551 Score = 102 bits (112), Expect = 3e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 55528 AATGGTTCACTTAAAGCTGAATATCTCCACTCTGCTTGCTTACGGATAAGCTTAGGTTGT 55587 ||||||||| | | |||||| |||||||| || ||||||||||| |||||| |||||||| Sbjct 1867 AATGGTTCAGTAAGAGCTGAGTATCTCCATTCAGCTTGCTTACGAATAAGCATAGGTTGT 1808 Query 55588 ACAGAACTTCTACCTACTTGTTGCTTAGGTTTATAAGCACCAGTTACATTTAACTGAGCT 55647 || ||| ||||| | | |||||||||| | |||||| ||||||| | | || Sbjct 1807 ACTGAAGACCTACCCGGTAACTTCTTAGGTTTAGCGGAACCAGTAACATTTAGGTTATCT 1748 Query 55648 AACCAA 55653 |||||| Sbjct 1747 AACCAA 1742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 213306327993522