Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_028885.1 Length=72378 Score E Sequences producing significant alignments: (Bits) Value seq9795 215 2e-51 >seq9795 Length=3651 Score = 215 bits (238), Expect = 2e-51 Identities = 670/1015 (66%), Gaps = 49/1015 (5%) Strand=Plus/Minus Query 7967 CACTACATCCCGCTGCTCGACGACCGCAACGTGAACGACCAGGGCATCGACGCTTCCGGC 8026 ||||||||||| ||||| || ||||| ||||| |||||||| || || || ||| | || Sbjct 3618 CACTACATCCCACTGCTGGATGACCGTAACGTCAACGACCAAGGTATTGATGCTGCTGGT 3559 Query 8027 GCTACCATCGCCAACGGCAACCTCTACGGTTCGAGCCGTGACGTGGGCAACATCACTGCG 8086 |||||||| || ||||| ||||| || ||||| ||| ||| | || | |||| | | Sbjct 3558 GCTACCATTGCTAACGGTAACCTGTATGGTTCTAGCAAAGACATTGGTACCATCCCATCT 3499 Query 8087 AAAATGCCGACCCTCACCGAGATCGGCGGTCGTGTGAACCGTGTTGGTTTCAAGCGTGTC 8146 ||| |||| | || || |||| || |||||||| ||||| |||||||||| ||| | Sbjct 3498 AAACTGCCAGCTCTGACTGAGAATGGTGGTCGTGTTAACCGCGTTGGTTTCACCCGTATT 3439 Query 8147 GAGATCAAGGGCAAGCTGGAGAAGTACGGCTTCTTCCGCGAGTACACCCAAG-AGCAACT 8205 || | | |||| | |||| | ||| |||||| |||| || || | ||||| | Sbjct 3438 CAGCTGCAAGGCACTATCAAGAAATTCGGTTTCTTCTATGAGTGGACTCAGGAAGCAA-T 3380 Query 8206 CGACTTCGACAGCGATCCGGCAATGGAAGGTCACGTCACTACCGAAATGGTGAAGGGCGC 8265 || || || | || | |||| ||| | | | ||| || || || || Sbjct 3379 GGATTTTGATACTGACGAAGAGCTGGATATGCACCTGATTCAGGAAGCTGTTAAAGGTGC 3320 Query 8266 GAACGAGATCACCGAAGACCTGCTCCAGATCGACCTGCTCAACTCGGCTGGCACCGTCCG 8325 ||||| ||||| || |||| | | ||||| |||||||| || ||||| || || Sbjct 3319 TAACGAAATCACTGAGGACCAGTTGCAGATTGACCTGCTGAATGGTGCTGGTGTTGTTCG 3260 Query 8326 TTATCCGGGCGCTGCAACCTCCGACGCTGA------AGTCGACG---CCACCACCGAGGT 8376 ||||||||| ||||| ||||| | || || | || | | | || | || Sbjct 3259 TTATCCGGGTGCTGCTACCTCTAATGCAGATATGACTGGTGAAGGTACTGCTACTGTAGT 3200 Query 8377 CACCTACGACTCGCT------GATGCGTCTGCGTCTGGACCTGGACAACGCTCGTGCTCC 8430 ||||| ||| || |||| || | |||| | |||||| || ||| ||| Sbjct 3199 TACCTATGACGGTCTGGTTAAGATGGGTATCACTCTGAA---TGACAAC-CT-GTG-TCC 3146 Query 8431 GACCAAGATCAAGATGATCACCGGTACCCGCATGATCGACACCCG---TACTGTGGGCAA 8487 | ||| |||| |||| | ||| | || ||||| || || || || | ||| Sbjct 3145 TATGCAGACCAAGCTGATTGCTGGTTCGCGTATGATTGATACTCGTGTTATTCCGGG--- 3089 Query 8488 CGCCCGTGCTCTGTACGTTGGTTCCGATCTGATTCCGA-CCATCG-AAGCCATGAAGGAC 8545 || |||||||||||| ||||||| || ||| | || | || ||| ||||| ||| Sbjct 3088 TGCTCGTGCTCTGTACATTGGTTCTGAACTGGAACTGATGCTGCGTAAG--ATGAAAGAC 3031 Query 8546 AACCACGGCAATCCGGCCTTCATCCCCATCGAGAAGTACGCTGCCGGTGGTGCCACCATG 8605 | |||| | || |||||||| | || ||||||||| | |||| | | | || Sbjct 3030 CCGTTTGACAATGCAGCTTTCATCCCGGTTCAGCAGTACGCTGATGCTGGTACTATCCTG 2971 Query 8606 CACGGCGAAGTCGGCCAGCTGGGTCGCTTCCGCGTCATCGTCAACCCGCAGATGATGCAC 8665 || || ||| | || | | | |||||| ||||||| || ||||| || | Sbjct 2970 CAAGGTGAAATTGGTTCTATCGCTTCTTTCCGCATCATCGTTGTTCCTAAGATGCTGAAA 2911 Query 8666 TGGGCCGGCGTCG--GCAAGGCCGTGGACCCGAACGACCAGGTTCCGATGCATGAGTCCG 8723 ||||| || | | |||| | || | ||| ||||||| | | || | || Sbjct 2910 TGGGCAGGTGCTGGTGCAA--CAGTTACTACCAAC--CCAGGTTACTACGC-TACTTC-- 2858 Query 8724 GCGGCAAGTACAGTGTCTTCCCGATGCTGTGTGTAGCTTCCGAGGCGTTCACCACTGTCG 8783 || ||||| || ||||| ||||||||||| | ||| | | ||||||||| ||| Sbjct 2857 -TGGTAAGTATGACGTATTCCCAATGCTGTGTGTTGGTTCTGGCTCCTTCACCACTATCG 2799 Query 8784 GTTTCGCTACCGATGGCAAGAACGTCAAGTTCAAGATCATCACCAAGCGCCCTGGCGAAG 8843 ||||| || ||||| |||| || |||||| | | ||||||| || ||| | Sbjct 2798 GTTTCCAGACAGATGGTAAGACTGTTAAGTTCGTTACCTACACCAAGAAACCAGGCATCG 2739 Query 8844 CCACTGC--CGACCGCAGTGACCCGTACGGCGAGATGGGCTTCATGTCCATCAAGTGGTA 8901 ||||| | ||| |||||||| || || |||||||||| || ||||| ||||| Sbjct 2738 AGACTGCATCTTATGCA--GACCCGTATGGTGAAATGGGCTTCACCTCAATCAAATGGTA 2681 Query 8902 CTACGGCTTCA-TGGTGTTCCGCCCCGAGTGGATCGCCCTGCTGAAGACCGTGGC 8955 |||||| |||| || | | || || || ||||| || ||| | ||||| || || Sbjct 2680 CTACGG-TTCACTGATTCTGCGTCCTGAATGGATTGCACTGTTCAAGACTGTAGC 2627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 231447396251982