Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_029017.1 Length=73420 Score E Sequences producing significant alignments: (Bits) Value seq9795 219 2e-52 seq12202 125 3e-24 seq8126 120 1e-22 seq12852 93.3 2e-14 >seq9795 Length=3651 Score = 219 bits (242), Expect = 2e-52 Identities = 699/1062 (66%), Gaps = 49/1062 (5%) Strand=Plus/Plus Query 14456 aaaaaaGGGGAGGTTTCCCTCCCCTCT-------AGCCTACCTTACAGGCGGGCTACGGT 14508 ||||||| | |||||||| | |||| | ||| ||||| | ||||| || Sbjct 2575 AAAAAAGAGTGGGTTTCCCCACTCTCTTAGTCAAAACCTCAATTACATCTGAGCTACAGT 2634 Query 14509 CTTGATGAGCGCGATCCACTCGGGACGGTACACCA-TGAAGCCGTAGTACCACTTGATGG 14567 ||||| || || ||||| || ||||| | || |||| ||||||||||| ||||| | Sbjct 2635 CTTGAACAGTGCAATCCATTCAGGACGCAGAATCAGTGAA-CCGTAGTACCATTTGATTG 2693 Query 14568 ACATGAAGCCCATTTCGCCGTAAGGATC--CAGGCGGTCAGCGGTCGCTTCGCCAGGCTT 14625 | ||||||||||||| || || || || || | | || ||| | ||| || || Sbjct 2694 AGGTGAAGCCCATTTCACCATACGGGTCTGCATAAGAT--GCAGTCTCGATGCCTGGTTT 2751 Query 14626 CTTGTTGTAGATCTTGAACTTGACGTTCTTGCCGTCGGTCTGGAAACCAACGGTGGTGAA 14685 |||| ||||| | |||||| || |||| || || ||||||||||| | |||||||| Sbjct 2752 CTTGGTGTAGGTAACGAACTTAACAGTCTTACCATCTGTCTGGAAACCGATAGTGGTGAA 2811 Query 14686 CGCCTCGGACGAGATCAC-CAGCATCGGGAAGATGCTGTACTTGTCGTTGAAGT--CGTG 14742 | | || | ||| |||||| ||||| | | ||||| | ||||| ||| Sbjct 2812 GGAGCCAGAACCAA-CACACAGCATTGGGAATACGTCATACTTACCA--GAAGTAGCGTA 2868 Query 14743 GTAGCCGTCGGCAGCCGGATCGACTGCCTTACCGGCGCCCTGCCAGTGCATCATCTGCGG 14802 ||| || | || | | | |||| ||| || || ||| | || ||||| || Sbjct 2869 GTAACC-TGGGTTG--GTAGTAACTGTTGCACCAGCACCTGCCCATTTCAGCATCTTAGG 2925 Query 14803 GTTGATGATGATGCGGAACTGATCGATTGCACCGATCTCGCCGATGAAGG-TGTTGCCGC 14861 | |||||||||||| | |||| | ||| || || || || ||| | | || Sbjct 2926 AACAACGATGATGCGGAAAGAAGCGATAGAACCAATTTCACCT-TGCAGGATAGTACCAG 2984 Query 14862 CAGCCGCGTACTTCTCGATGGAGATGAACGCCGGATTGCCGTGGTTGTCCTTCATGGCTT 14921 || | ||||||| || | | |||||| || | |||| | ||| ||||| ||| Sbjct 2985 CATCAGCGTACTGCTGAACCGGGATGAAAGCTGCATTGTCAAACGGGTCTTTCAT--CTT 3042 Query 14922 TC--AGGGTCGGAATCAGTTCACTGCCGCAGTACAGCGGACG-GCATCCCGGAATGGTGC 14978 | || || | ||||||| || |||||| | ||| ||| |||||||| | Sbjct 3043 ACGCAGCATCAGTTCCAGTTCAGAACCAATGTACAGAGCACGAGCA-CCCGGAATAACAC 3101 Query 14979 GGGTGTCGATCATCCGGGTGCCGGTGATCATCTTGGTGCCCTTCGGGGCGCGGTTGTTGT 15038 | || || ||||| || | || | |||| |||||| | | || |||||| | Sbjct 3102 GAGTATCAATCATACGCGAACCAGCAATCAGCTTGGTCTGCATAGGACACAGGTTGTCAT 3161 Query 15039 CCAGGTCGATGTTGAGGCGCATCAGGGAGTCGTAGGTAACTTCCGTGGTGGCATCCACTT 15098 ||| ||| | | ||| ||| ||||||||| | || | | | | || Sbjct 3162 TCAGAGTGATACCCATCTTAACCAGACCGTCATAGGTAACTACAGTAGCAGTACC---TT 3218 Query 15099 CGCT-GTC----CTG-------GGTGGCTGCGCCCGGATAACGGACGACGCCGGCGCTGT 15146 | | ||| ||| ||| || || ||||||||||| || || || || | | Sbjct 3219 CACCAGTCATATCTGCATTAGAGGTAGCAGCACCCGGATAACGAACAACACCAGCACCAT 3278 Query 15147 TGAGCAGGTCGATCTGGAGCAGGTCTTCGGTCATCTCGTTGGCGCCTTT--CAGCATCTC 15204 | |||||||| ||||| | | |||| || || || ||||| || ||||| |||| || Sbjct 3279 TCAGCAGGTCAATCTGCAACTGGTCCTCAGTGATTTCGTTAGCACCTTTAACAGCTTCCT 3338 Query 15205 ACGTCCAACGTGCATGTCCAGTTCTGCGTCGCTATCGAAGTCCAGCGACTCCTGGGTGTA 15264 || | |||||| ||||| ||| |||| |||| || |||| | ||||| || | Sbjct 3339 GAATC--AGGTGCATATCCAGCTCTTCGTCAGTATCAAAATCCATTGCTTCCTGAGTCCA 3396 Query 15265 CTCCCGGAAGAAGCCGTACTTTTCCAGCTTGCCTTCGAGCAGAACGCGCTTGAAGCCAAC 15324 ||| |||||| ||| | || | | |||||| ||| ||| || |||| ||||| Sbjct 3397 CTCATAGAAGAAACCGAATTTCTTGATAGTGCCTTGCAGCTGAATACGGGTGAAACCAAC 3456 Query 15325 GCGGTTCACACGACCGCCGACTTCGGTGAGGGTCGGCATCTTGCCGACGATGGTGCCCAC 15384 |||||| |||||||| || || || || | |||| || |||||| || | Sbjct 3457 GCGGTTAACACGACCACCATTCTCAGTCAGAGCTGGCAGTTTAGATGGGATGGTACCAAT 3516 Query 15385 GTCACGGCTCGAACCGTAGAGGTTGCCGTTGGCGATGGTAGCGCCGGAAGCGTCGATGCC 15444 ||| ||| ||||| || ||||| ||||| || |||||||| || | ||| || || || Sbjct 3517 GTCTTTGCTAGAACCATACAGGTTACCGTTAGCAATGGTAGCACCAGCAGCATCAATACC 3576 Query 15445 CTGGTCGTTGATGTTGCGGTCGTCGAGCAGCGGGATGTAGTG 15486 |||||||||| ||| ||||| || ||||| ||||||||||| Sbjct 3577 TTGGTCGTTGACGTTACGGTCATCCAGCAGTGGGATGTAGTG 3618 >seq12202 Length=11894 Score = 125 bits (138), Expect = 3e-24 Identities = 217/311 (70%), Gaps = 6/311 (2%) Strand=Plus/Minus Query 22659 TAGCAGTCATCATCAGTTCAGCCTGGACGTTAATGGCCTTCTGGTAGATATCAGCATTCA 22718 ||||| ||| ||| | |||||||| ||||| || || ||||| | | ||||||||||| Sbjct 7082 TAGCATTCAACATTAAATCAGCCTGTACGTTGATTGCTTTCTGAAATACATCAGCATTCA 7023 Query 22719 GAACGTGAGTCGGGATCAACGTCTGTTCCAGAATCAGGTTCACCAGCTTCGACTTGTTGT 22778 |||| || || || | ||| |||||||| || ||||| |||||||| |||||||| Sbjct 7022 GAACATGGGTAGGAACCAAAGTCTGTTCATAGATAAGGTTAACCAGCTTGTTCTTGTTGT 6963 Query 22779 ACGCACTGACGTAGCTGGCAATGTCTTTCGATGCATAGTTCTGCATCGTCCACCGCTGG- 22837 | ||| ||||||| | ||| ||||| | | | || | | | ||| Sbjct 6962 AAGCAGATACGTAGCAGTGAATATCTTTGGCAGGAACATTATTATTTAAGAAGTTTTGGT 6903 Query 22838 ATCTTGTCAGGGAAAGTCCGGCTGAAGGCGTCAATGTTTGTGCAGCCCATGAGCTTGTGG 22897 ||| ||||||||| || || | | |||| ||| ||||| ||||| | |||| Sbjct 6902 ATC-GGTCAGGGAATGTTTTAATGTATGACTCAAAGTTAGTGCATCCCATTAACTTGAAA 6844 Query 22898 CTCACGTACTTCACCGCATGGAT--GTACCCATCCAGCTTGAACTTGCCTTCGTTCATCA 22955 ||||| |||||||| || |||| || |||| | ||| || | ||||| ||||||| Sbjct 6843 CTCACATACTTCACTGC--GGATAAATAATCATCAATCTTAAATCTACCTTCCTTCATCA 6786 Query 22956 CATGCGTGTAG 22966 |||| |||||| Sbjct 6785 CATGGGTGTAG 6775 >seq8126 Length=2631 Score = 120 bits (132), Expect = 1e-22 Identities = 308/469 (66%), Gaps = 0/469 (0%) Strand=Plus/Minus Query 17611 GAGTTTCCTGAACTTGTGCTTCCAGCAGAGCAACTTCCAGTTCGGCCTTACGCTGAGCAA 17670 ||||||| || ||| || || | | |||| |||||| || || ||||| || || | Sbjct 809 GAGTTTCTGCAATTTGAGCCTCTAATAATGCAATTTCCAGCTCAGCTTTACGTTGTGCGA 750 Query 17671 TCGGATCCGGTTGCGGCTGGTAGTTACGAATCTGATGTGCCAAGTCTGGCATCTTCTTCA 17730 || || ||||| ||||| || || ||| | | || ||||| ||||| || ||| Sbjct 749 GTGGGTCAGGTTGAGGCTGATATTTCTCAATTCGTTTAGCTAAGTCAGGCATATTTCTCA 690 Query 17731 GTTCCGCAATCTCCGCCAGAATCATCTGGTTCATTCCCCATTCCAGGTTCGGCCCCATGG 17790 || ||||| || | | |||||| |||| | || ||| | ||||| | Sbjct 689 GTCGAGCAATATCACTTAATACCATCTGAGACATTTCGAATGGCAGACTATTACCCATAG 630 Query 17791 TTTGAAGCATGAAGCTCAAGTCGGCAACCTTGGCGTTGTCTTCTTCAGCAGTGCTGATAC 17850 | ||||||||||| ||| || | || ||| ||| |||||||||| |||| Sbjct 629 TCTGAAGCATGAATGCCAACTCTTGTGCTTTCTGGTTATCTGCTTCAGCAGTAGAAATAC 570 Query 17851 TCAACCGCAGATCGAACTCACCGGCAAGATCGTCACGACGAACAGTAACGAACCCTTCGT 17910 | ||| || || || | || || | || || | |||||| | ||||| | || | Sbjct 569 TTAACTTAAGGTCAAAGTTTCCAGCTAATTCATCTCTACGAACTGATACGAAATCATCAT 510 Query 17911 TGGTGATCCGTATGACTTCTTCGTCATCCAGGAACTCAGCGTTCATCGCGATTACACGAC 17970 | ||||| |||| |||||||| ||| | ||||||||| ||||| | | | | Sbjct 509 TAGTGATTCGTACAACTTCTTCTTCAGATAAGAACTCAGCATTCATAGATACAAACTTAT 450 Query 17971 GACCTACTTCGATCAGGCAATCACTCAGCCGACGAAGGATGCCCAATTCCCGTTTCGATG 18030 || | || | | || | | || | |||||| || || ||||| ||||| || | Sbjct 449 AGCCAATATCCACAATGCCTTGAGCCAATCTACGAAGAATACCTAATTCACGTTTAGAAG 390 Query 18031 CAGCATCCAGAGCACCGCGAATACCAGTAGCCGTATCGCCCAATGCCTG 18079 ||||||||| || || |||||||||| ||| |||||| || || || Sbjct 389 CAGCATCCAATGCGCCACGAATACCAGCAGCTACATCGCCTAAAGCTTG 341 >seq12852 Length=38369 Score = 93.3 bits (102), Expect = 2e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 41337 GACGAGTTCGACAAGTTGCTGATCGCCGGCAATTCCAACTCGGAACTGGCCCATGAAAGC 41396 || || ||||||||||| | ||||| |||||| ||| || ||||||||||| Sbjct 30670 GATGAATTCGACAAGTTATTCATCGCAGGCAATAACAATAGTGAGTTGGCCCATGAATCT 30611 Query 41397 ACTGCGGGGGTTCAGAATGAATTCCTGAAGATGCTGGAATCGGACATCACCAAGGTCTAC 41456 || || ||||||||||||||||||||| | |||||| | || ||| || | Sbjct 30610 ACCAATGGAGTTCAGAATGAATTCCTGAAGGTTCTGGAAGCTGAGTGTACCTCAGTGTTT 30551 Query 41457 GGCGACTACGGCAAGTACCAAGAAGTGAACGTCGGTAAAGTCCTCTTCATCTTCGCCGGC 41516 |||||||| |||||||| || || || |||| || || || |||| ||||| Sbjct 30550 GGCGACTATGGCAAGTATGTGGACGTACCTGTAAGTAACGTTCTGTTTGTCTTTGCCGGA 30491 Query 41517 GCCTTCAATGG 41527 || |||||||| Sbjct 30490 GCATTCAATGG 30480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 234781257473378