Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_029101.1 Length=72192 Score E Sequences producing significant alignments: (Bits) Value seq9795 206 1e-48 seq12202 107 9e-19 >seq9795 Length=3651 Score = 206 bits (228), Expect = 1e-48 Identities = 668/1016 (66%), Gaps = 51/1016 (5%) Strand=Plus/Minus Query 15730 CACTACATCCCGCTGCTCGACGACCGCAACGTGAACGACCAGGGCATCGACGCTTCCGGC 15789 ||||||||||| ||||| || ||||| ||||| |||||||| || || || ||| | || Sbjct 3618 CACTACATCCCACTGCTGGATGACCGTAACGTCAACGACCAAGGTATTGATGCTGCTGGT 3559 Query 15790 GCTACCATCGCCAACGGCAACCTCTACGGTTCGAGCCGTGACGTGGGCAACATCACTGCG 15849 |||||||| || ||||| ||||| || ||||| ||| ||| | || | |||| | | Sbjct 3558 GCTACCATTGCTAACGGTAACCTGTATGGTTCTAGCAAAGACATTGGTACCATCCCATCT 3499 Query 15850 AAAATGCCGACCCTCACCGAAATCGGCGGTCGTGTGAACCGTGTTGGTTTCAAGCGTGTC 15909 ||| |||| | || || || | || |||||||| ||||| |||||||||| ||| | Sbjct 3498 AAACTGCCAGCTCTGACTGAGAATGGTGGTCGTGTTAACCGCGTTGGTTTCACCCGTATT 3439 Query 15910 GAGATCAAGGGCAAGCTGGAGAAGTACGGCTTCTTCCGCGAGTACACCCAAG-AGCAACT 15968 || | | |||| | |||| | ||| |||||| |||| || || | ||||| | Sbjct 3438 CAGCTGCAAGGCACTATCAAGAAATTCGGTTTCTTCTATGAGTGGACTCAGGAAGCAA-T 3380 Query 15969 CGACTTCGACAGCGATCCGGCGATGGAAGGTCACGTCACCACCGAAATGGTGAAGGGCGC 16028 || || || | || | | |||| ||| | | ||| || || || || Sbjct 3379 GGATTTTGATACTGACGAAGAGCTGGATATGCACCTGATTCAGGAAGCTGTTAAAGGTGC 3320 Query 16029 GAACGAGATCACCGAAGACCTGCTGCAAATCGACCTGCTCAACTCGGCCGGCACCGTCCG 16088 ||||| ||||| || |||| | |||| || |||||||| || || || || || Sbjct 3319 TAACGAAATCACTGAGGACCAGTTGCAGATTGACCTGCTGAATGGTGCTGGTGTTGTTCG 3260 Query 16089 TTATCCGGGCGCTGCAACCTCCGATGCTGA------AGTCGACG---CCACCACCGAGGT 16139 ||||||||| ||||| ||||| |||| || | || | | | || | || Sbjct 3259 TTATCCGGGTGCTGCTACCTCTAATGCAGATATGACTGGTGAAGGTACTGCTACTGTAGT 3200 Query 16140 CACCTACGACTCGCT------GATGCGTCTGCGTCTGGACCTGGACAACGCCCGTGCTCC 16193 ||||| ||| || |||| || | |||| | ||||| || ||| ||| Sbjct 3199 TACCTATGACGGTCTGGTTAAGATGGGTATCACTCTGAA---TGACAA--CCTGTG-TCC 3146 Query 16194 GACCAAGATCAAGATGATCACCGGTACCCGCATGATCGACACCCG---TACCGTGGGCAA 16250 | ||| |||| |||| | ||| | || ||||| || || || || ||| Sbjct 3145 TATGCAGACCAAGCTGATTGCTGGTTCGCGTATGATTGATACTCGTGTTATTCCGGG--- 3089 Query 16251 CGCTCGTGCCCTGTACGTTGGTTCCGACCTGGTTCCGA-CCATCG-AAGCCATGAAGGAC 16308 |||||||| |||||| ||||||| || |||| | || | || ||| ||||| ||| Sbjct 3088 TGCTCGTGCTCTGTACATTGGTTCTGAACTGGAACTGATGCTGCGTAAG--ATGAAAGAC 3031 Query 16309 AACCACGGCAATCCGGCCTTCATCCCCATCGAGAAGTACGCTGCCGGTGGTGCCACCATG 16368 | |||| | || |||||||| | || ||||||||| | |||| | | | || Sbjct 3030 CCGTTTGACAATGCAGCTTTCATCCCGGTTCAGCAGTACGCTGATGCTGGTACTATCCTG 2971 Query 16369 CACGGCGAAGTCGGCCAGCTGGGTCGCTTCCGTGTCATCGTCAACCCGCAGATGATGCAC 16428 || || ||| | || | | | ||||| ||||||| || ||||| || | Sbjct 2970 CAAGGTGAAATTGGTTCTATCGCTTCTTTCCGCATCATCGTTGTTCCTAAGATGCTGAAA 2911 Query 16429 TGGGCCGGCGTCG--GCAAGGCCGTGGACCCGAACTACCAGGTTCCGATGC-ACGAGTCG 16485 ||||| || | | |||| | || | ||| ||||||| | | || || || Sbjct 2910 TGGGCAGGTGCTGGTGCAA--CAGTTACTACCAAC--CCAGGTTACTACGCTAC--TTC- 2858 Query 16486 GGCGGCAAGTACAGCGTCTTCCCGATGCTGTGTGTGGCTTCCGAGGCGTTCACCACTGTC 16545 || ||||| ||| ||||| ||||||||||| | ||| | | ||||||||| || Sbjct 2857 --TGGTAAGTATGACGTATTCCCAATGCTGTGTGTTGGTTCTGGCTCCTTCACCACTATC 2800 Query 16546 GGTTTCGCTACCGATGGCAAGAACGTCAAGTTCAAGATCATCACCAAGCGTCCTGGCGAA 16605 |||||| || ||||| |||| || |||||| | | ||||||| || ||| Sbjct 2799 GGTTTCCAGACAGATGGTAAGACTGTTAAGTTCGTTACCTACACCAAGAAACCAGGCATC 2740 Query 16606 GCCACTGC--CGACCGCAGTGATCCGTACGGCGAGATGGGCTTCATGTCCATCAAGTGGT 16663 | ||||| | ||| || ||||| || || |||||||||| || ||||| |||| Sbjct 2739 GAGACTGCATCTTATGCA--GACCCGTATGGTGAAATGGGCTTCACCTCAATCAAATGGT 2682 Query 16664 ACTACGGCTTCA-TGGTGTTCCGCCCCGAGTGGATCGCCCTGCTGAAGACCGTGGC 16718 ||||||| |||| || | | || || || ||||| || ||| | ||||| || || Sbjct 2681 ACTACGG-TTCACTGATTCTGCGTCCTGAATGGATTGCACTGTTCAAGACTGTAGC 2627 >seq12202 Length=11894 Score = 107 bits (118), Expect = 9e-19 Identities = 474/731 (65%), Gaps = 32/731 (4%) Strand=Plus/Plus Query 8703 ACTTCATCAAGATGGTCAACGGCAACGAAGGGGAAGAGAACAAGACACCAGTACTTCACC 8762 |||| |||||| |||| || || | | |||||| ||| || |||||| |||| | Sbjct 7438 ACTTTATCAAGTTGGTTAATGGTGAAGGTGGGGAATCTAACCTTACTCCAGTAGTTCATC 7497 Query 8763 TGCGTATGCTTGACCAGATTGGATCTGGTCAG---ACCCGGATCGCCAACATGGTGTTC- 8818 | |||||||| | ||||| | ||| | || || | || || | || || Sbjct 7498 TTAAGATGCTTGATGA-ATTGG--CAGGTAAACGTACTCGATTAGCTAATCTT-TGCTCT 7553 Query 8819 CGTGGTGCAGCGAAGACCACCGTGATGGGTGAGTACCTGTTCCTGTACATTGCACTGTAC 8878 |||||| || || || ||| || | ||||| || || |||| || ||||| ||||| Sbjct 7554 CGTGGTATGGCTAAAACTACCCTGTTTGGTGAATATCTCGTCCTATATATTGCCCTGTAT 7613 Query 8879 GGTGAGCTTCCTGGTTTCGGTAAGGTAGACCTTGCTCTGTATGTGTCGGACTCCATCGAC 8938 || ||| || ||| || ||| | | || | | ||| | || ||||| || || Sbjct 7614 GGGGAGATTGATGGATTTGGTGATATCGAAGGTATGATTTATATCTCTGACTCTATGGAG 7673 Query 8939 AACGGTGTGAAGAACATGCGGAA-GAACCTGGAGTTCCGTTGGGAGAACTCTGAGTTCTT 8997 || || || || | ||| ||| |||| | || | ||| | | |||||||| ||| | Sbjct 7674 AATGGGGTAAA-ATCATTAAGAAAGAACATTGAATACCGCTATAACAACTCTGAATTCCT 7732 Query 8998 GAGGAAGTACATCCCTCAGACCAGCTTCACTGATATCCGT-TGGAAGTTCACCAACCTGG 9056 ||||||||| || || ||| || |||||| | ||||| || || || | Sbjct 7733 TCAGAAGTACATTCCAGAGGCCAAATTTACTGATGCCTACATGGAATTT-ACTAATGCTG 7791 Query 9057 ATGGG---AAGGT-GTTCATCGTCAAAGGCTACGGTGCCAAGACTGGTGTCCGTGGTGCG 9112 ||||| ||| | | | |||| | | | ||||| |||||||| | |||||| | Sbjct 7792 ATGGGCATAAGCTAGGTGTTCGT---ATGTTT-GGTGCTAAGACTGGCTTACGTGGTACC 7847 Query 9113 AAGGAGATGGGTAAACGTCCGCAGCTTGCGGTACTGGATGACTTGGTTTCGGACGAAGAT 9172 || | ||||||||||| | || || |||||||| | ||| || || ||| Sbjct 7848 AAAATCTTCGGTAAACGTCCTGTTTTGGCTGTGTTGGATGACCTCGTTAGTGATGATGAT 7907 Query 9173 GCTCGCTC---GCCCACTGTCATCGCA-GCCATCGAGGACACGGTGTACAAGGCAGTGGA 9228 ||| || | | ||| | ||| |||||| |||| || || ||||| | || || Sbjct 7908 GCTAAATCTAAGTCAACTAT----GCAGGCCATCAAGGATACTGTATACAAAGGTGTTGA 7963 Query 9229 CTATGCACTGCACCCGA--AGAAGAACATGATCATCTGGTCGGGTACACCGTTCAACGCG 9286 ||||| || |||| | | ||| | ||| | | || ||||| || ||| | Sbjct 7964 TTATGCTTTGGACCCTACTCGTAGA--AAGATTGTTTTCAGTGGCACACCCTTTAACAAG 8021 Query 9287 AAGGATCCATTGTACAAAGCAGTGGAGTCTGGTGCTTGGAAGGTCAACGTCTACCCGGTA 9346 || ||| | || |||||||||| || |||| |||| | |||||||| | ||| | Sbjct 8022 AACGATATTCTTTATGAAGCAGTGGAATCAGGTGGTTGGTACGTCAACGTATTCCCCATT 8081 Query 9347 TGTGAGCGGTTCCCCTGCTCGCGGGAAGAGTTCCGTGGTGCATGGCCTGACCGATTCACC 9406 |||||| ||||| || || | ||||| || ||||| ||| ||||| ||| | Sbjct 8082 TGTGAGAAATTCCCTTGTGCGAGAGAAGACTTTGTAGGTGCTTGGGAAGACCGCTTCTCA 8141 Query 9407 TACGACTTCGT 9417 || |||||||| Sbjct 8142 TATGACTTCGT 8152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230852292425514