Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_029106.1 Length=62220 Score E Sequences producing significant alignments: (Bits) Value seq11654 248 3e-61 >seq11654 Length=7460 Score = 248 bits (274), Expect = 3e-61 Identities = 584/869 (67%), Gaps = 31/869 (4%) Strand=Plus/Minus Query 14345 TGGGGTCGCATGCAGGTTCTGCACATCCAGGACGCTCTCGATCCCGAACAGACTCGTGGC 14404 ||||| ||| | ||| | ||||||| || || || | || | ||||||||| || Sbjct 2313 TGGGGCCGCCGCCGGGTGATCCACATCCTCGAAGCGCTGCACCCGGGACAGACTCGCGGT 2254 Query 14405 ATCAGCGACATGGTGTCCGTGCTGAAGCAGATCAAGATGACCAAGAATTTCCAGGACGTG 14464 |||||||| |||||||| | ||| |||||||| |||||||| |||||||| || | Sbjct 2253 ATCAGCGAAATGGTGTCGGCGCTCAAGCAGATGAAGATGACGCGTAATTTCCAAGAGATC 2194 Query 14465 ACGTTGCAGAACGCGGTGGTAAACGCCTCGTATGCCGCCGCCCTGGAATCGGAATTGCCG 14524 ||| |||||||||| | || ||||| | || || || ||| | || ||||| ||||| Sbjct 2193 ACGCTGCAGAACGCCATCGTGAACGCGACCTACGCAGCGGCCATCGAGTCGGAGCTGCCG 2134 Query 14525 GCCGATATGGTTGCGGCT-GC-GATGGGTCAAGGTCAGACCACTTTCGGTGCCGTGGCCT 14582 | ||| || | | || || | | || || ||||| ||||||| | | | ||| Sbjct 2133 TCGGATGTGAT--CTTCTCGCAGCTCGGCATGGGCCAGACGCCTTTCGGCGACAT--CCT 2078 Query 14583 --ACGACTACATGTCGATGCTGGCTCAGTACATGGGTGCTGCCGGCGC-CATTCAAATTG 14639 | | ||||||| ||| ||||| | ||| | | | | || | ||| |||| | Sbjct 2077 GAATGGCTACATGGCGAGTCTGGCGGAATACCTCGCCGG-GTCGAAGAACATCAAAATCG 2019 Query 14640 ATGGTGCCAAGATCCCGCAGCTGTTCCCCAACACGAAGCTGCGCATGCAGCCCATGGGGA 14699 | || | ||||||||||| || ||||| ||||||| || ||||| ||| || | Sbjct 2018 ACGGCGTGAAGATCCCGCACCTCTTCCCGGGCACGAAGTTGAAAATGCAACCCGCCGGTA 1959 Query 14700 CTCCCGGTGGTGTTGGAACGCCTTTCGAAGAATCGTTGCTGCGCTACATTGCCGCAGGCC 14759 | || || || || || ||| | |||||| ||| |||||||| |||| || || | Sbjct 1958 CGCCGGGAGGCGTCGGCACGGACTACGAAGAGTCGCTGCTGCGCAACATCGCGGCGTCGC 1899 Query 14760 TGGGCCTGTCCTACGAGCAGTTCTCGAAGGATTACAGCAAGGTCAACTACTCGTCCGCTC 14819 | ||||||||||| ||||| ||| ||| |||| ||| |||||| |||||||| | Sbjct 1898 TCGGCCTGTCCTATGAGCAATTCAGCCGGGACTACACGAAGACCAACTATTCGTCCGCCC 1839 Query 14820 GCGCCGGTCA--GAACGAAGCGTTCAAGATGACGCAGTCGCGCAAGAAACTGATCGCCGA 14877 |||| ||| | |||| ||| ||| | | || ||||| || || ||||||| Sbjct 1838 GCGC--TTCAATGGCCGAAACGTGGAAGTACATGGAGAGCCGCAAAAAGCTCGTCGCCGA 1781 Query 14878 CCGTGTCGCCACCGAGATCTACACGTTGTGGCTGGAAGAAGACATCATGGCGGGCAACCT 14937 | | || || ||| ||| ||||||| |||| ||||| ||| || || || | Sbjct 1780 CAAACTGGCGTCCATGATTTACGTGTTGTGGTTGGAGGAAGAGGTCAATGCTGGTAATGT 1721 Query 14938 GCCGATGTATCCCGGCTTCAGCAAGGACAAGTTCTATCGTGACCCCCT----CGTCAAGG 14993 || || || ||| | | | | | ||||| ||||| | ||| | Sbjct 1720 TCCTTTGCCGCCGGGCATGACTTGGCGCGACTTCTA---CGACCCGATGAAGCGT---GA 1667 Query 14994 CGGCGCTTGCA---CAGTGCGGCTGGATCGGCGCCGGCCGTGGCCAGATCGACGAGTTGA 15050 | | ||||| ||| | ||||| ||||| |||| ||||||||||||||| || Sbjct 1666 TGCCCTTTGCAACGCAGAG----TGGATTGGCGCGAGCCGGGGCCAGATCGACGAGAAGA 1611 Query 15051 AGGAAACCCAGTCGGCTATGATGCGCATCAAGTCGGGCCTGTCTACCTTCGAAAAGGAAT 15110 | |||||| | |||| || ||||||||||| |||||||| || | |||| || Sbjct 1610 AAGAAACCGAAGCGGCGATCCTGCGCATCAAGAATGGCCTGTCAACGTACGAAGCCGAGA 1551 Query 15111 GCGCACGACTGGGCGAAGATTTCCGCGAGATCTTCAAACAACGTCAGCGCGAAGATCGCA 15170 || || ||||| | || ||||||||| | ||||| || || ||||| || ||| Sbjct 1550 TTGCCCGTCTGGGTGGTGACTTCCGCGAGGTATTCAAGCAGCGCGCCCGCGAGGAAGGCA 1491 Query 15171 TGATCCAAGAAATGGGCCTGACGTTCACC 15199 | ||| |||| ||||||||| ||| || Sbjct 1490 TCATCAAAGAGCTGGGCCTGAACTTCTCC 1462 Score = 219 bits (242), Expect = 2e-52 Identities = 461/679 (68%), Gaps = 10/679 (1%) Strand=Plus/Minus Query 11410 AGGCCGCCACTCGATTCCGAAAGGTGCATCAGCCCGGGTCGTATATCGGCGACTGGAAGA 11469 ||||||||| || ||| | || |||||||||| |||| |||| |||| || Sbjct 5319 AGGCCGCCAGCAAATATCGATACGTCAATCAGCCCGGCGCGTACGTCGGGCCGTGGATGA 5260 Query 11470 ACGAGATGACGCCGTACATGGTTGAGCCGTGCGACATTTGGTCAAGCCGCGACGTGAATA 11529 ||| | ||| ||||||||||| || ||| |||| | ||||| || | | Sbjct 5259 ACGTCACGACCCCGTACATGGTCGACCCGATGAACATGCTGAACAGCCGGGAATACGACA 5200 Query 11530 AGGCTGCGTTCTGCGGGCCGGCGCAGTCGGGCAAAACCGACGCTATCGTCGTAAACGGCG 11589 || || ||| ||| ||||||||||| ||||| || || || | || | |||||| Sbjct 5199 AGATGGCCTTCGTCGGCCCGGCGCAGTCCGGCAAGACGGATGCGCTGATCCTGAACGGCA 5140 Query 11590 TGGGCTACCATGTCACATG-CGAACCGATGGACATGGTTGTCTATAACCCATCTATGGCG 11648 | | ||| || | || ||| |||||||||| | | |||||| ||| | | || Sbjct 5139 TCGCTTACTCGGTG-CGTGTCGACCCGATGGACACGATGGTCTATTGCCCCACCAGCACG 5081 Query 11649 GCGGCCCGAGACTTCAGCAATCGTCGTATTGATCGTCTGCACATTCACAGCAAGGACATC 11708 ||||| || |||||| || |||||| |||| ||||| || |||||| ||| || Sbjct 5080 GCGGCGCGCGACTTCTCCATGCGTCGTGTTGACCGTCTCCATCGGCACAGCCCGGAAGTC 5021 Query 11709 GGCAAGCACATTCGTATTG-GCACCTCT--GCCGATAACGTTCTCGACAAGACCTACATC 11765 |||||| || | || | ||| | || || ||| |||| ||| ||||||| Sbjct 5020 GGCAAG---ATGCTGATGAAGAACCGCGACGCTGACAACAAATTCGATAAGCACTACATC 4964 Query 11766 AACGGAATGCTGCTGACGTTGTCGTGGCCGTCTGTGACTGAGTTCGCCGGTAAGCCAATT 11825 | ||| || | ||||| ||| | ||||| || || || | || || || || Sbjct 4963 ACCGGCATCATCCTGACATTGAGCTATCCGTCAGTAACCGAACTTGCTGGCCGTCCGGTT 4904 Query 11826 GGTCGTGCTGTGCTGACCGACTACGACCGCATGGACGACGACATCAACGGCGACGGCAAC 11885 || || | | |||||||| ||||| || |||||||||||| |||||| || ||| Sbjct 4903 GGCCGCATCATCATCACCGACTATGACCGTATCGACGACGACATCGGCGGCGATGGTAAC 4844 Query 11886 CCGTTCGACTTGGCTGCAAAGCGGACCACCACGTTCGGCAGCTTTGCAATGACGTTCGCG 11945 | |||||| | || ||||||| || |||||||| ||| || || ||| |||| Sbjct 4843 GCCTTCGACCTCGCATCAAAGCGTACGACCACGTTTGGCTCGTTCGCCATGTGCATCGCC 4784 Query 11946 GAGTCGTCGCCGTCTCGACCCATTCTTGATCCGAAGTGGATGCGTTCG-TCGGCGCACGA 12004 ||||| |||||||| || || || || || ||||| ||||| | || ||| ||||||| Sbjct 4783 GAGTCCTCGCCGTCCCGGCCGATCCTCGACCCGAACTGGAT-CAAGCGATCGCCGCACGA 4725 Query 12005 GGCGCCGCCAACCACTGGCATTCTCGCGCTCTATAACCGTGGGGATCGTCGCCGCTGGTA 12064 || |||||| ||||| ||| | | || || || || || || || |||||| | Sbjct 4724 AGCCCCGCCATGTGACGGCATCGTCGGGTTATACAATCGCGGCGACCGCCGACGCTGGCA 4665 Query 12065 TTGGCCCTGCCCGCACTGC 12083 |||||| |||||||| ||| Sbjct 4664 TTGGCCGTGCCCGCATTGC 4646 Score = 138 bits (152), Expect = 5e-28 Identities = 346/523 (66%), Gaps = 7/523 (1%) Strand=Plus/Minus Query 15496 CAAACCCTTCGCTTTCGCCAATGGGTTGGCCGTGATTCCGATCCATGGCTCGCTGTTGAA 15555 ||| || ||||| | | |||| || | ||| | || ||| | || ||| | ||| | || Sbjct 1173 CAAGCCTTTCGCCTACTCCAACGGCGTCGCCATCATCCCGGTACACGGCACCCTGATTAA 1114 Query 15556 TCGCTTCAGCGGTTCGTATGGTGGCGCC---ACCGGGTACAACTTCATCCGCTCGCAGAT 15612 |||| | |||||| || |||| | ||||| |||||||||||||| |||||| Sbjct 1113 CCGCTACGGCGGTTATTACTATGGCTACGTGACCGGCTACAACTTCATCCGTTCGCAGCG 1054 Query 15613 GCGTGCAGCGCTGGCGGATGACGACGTCAAGGGCATCGTGTTCGACATCAACTCGCCTGG 15672 || |||||| ||| ||| || ||| || | | ||||||||||||| || Sbjct 1053 CAACGCCGCGCTGATGGACTCCGATGTGCAGGCGATTATCTACGACATCAACTCGAACGG 994 Query 15673 TGGTGAAGCGGCGGGCTGCTTTGAACTGGCGTCCGAAATCATGGAAAGCCGTTCGGTCAA 15732 ||| || ||||| || ||||| |||||| || ||||| | || | || ||| || Sbjct 993 TGGCGAGGCGGCCGGGTGCTTCGAACTGTCGCAGGAAATGTTTGACACACGCGGGGTGAA 934 Query 15733 ACCGTCGCTGGCGCTGGTCGACACGCTGTGCGCCAGCGCTGCCTATGCGCTCGGCTCGGC 15792 ||| ||||||||| | |||| | ||| || || ||||| ||||| || Sbjct 933 ACCTTCGCTGGCGGTAATCGATTCAAATTGCTATTCTGCAGCATATGCCATCGGCAGCGC 874 Query 15793 CGCCAGCAAGATGACCGTTGTTCGGTCTGCGGTGGTG--GGTTCCATCGGCGTTCTGACC 15850 |||| | ||||| ||| | ||| ||||||| || ||| || || | || Sbjct 873 CGCCGACCGAATGACGGTTACACCGTC--GGGTGGTGCTGGCAGCATTGGTGTGATCTCC 816 Query 15851 ATGCACGCCGACGTGTCGACCTTGCTTGACAATTTGGGAATCAAGATTTCCTTGATACAC 15910 ||||||| |||| |||||| |||| || | | || |||||| | | | || | Sbjct 815 ATGCACGTCGACATGTCGAAGATGCTGGAAGACATCGGCATCAAGGTCAGCATCATTAAG 756 Query 15911 TCCGGCAAGCATAAAGTCGACGGTAACCCTCTGGAACCGCTGCCGGACGAAGTTCGCAAG 15970 || ||| | || |||| ||| || ||||| | ||||| ||| | || || |||| | Sbjct 755 TCAGGCGACCACAAAGCCGATGGCAACCCGTTCGAACCACTGTCTGATTCAGCTCGCGCG 696 Query 15971 GATATCCAGGCCAACATCGACGAATTGCGAGCCGAGTTTGTCA 16013 | ||||||| | ||||| | ||||| | || ||||||| Sbjct 695 TCATTTCAGGCCAGCGTCGACAACATGCGAACGGATTTTGTCA 653 Score = 91.5 bits (100), Expect = 6e-14 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 12718 AGCCTGGTACGTATCAGGAAGACTGGGATCTGATAACAGAGCATGTGCTGAACAAGACGT 12777 |||| || | ||||||||||| |||||||| || | ||||| ||| || |||| | Sbjct 4010 AGCCCGGCGCATATCAGGAAGATTGGGATCTCATCAAAGAGCTGGTGATGGACAAAGAAT 3951 Query 12778 ACTCGCTCGATGACGACTCGGGGCGCGTGATGGGCATCAAGATGGCCGGATGCGACTCGG 12837 || |||||| |||| | || || |||| ||||||||| ||| |||||||| | Sbjct 3950 ACCCGCTCGCGGACGGCAGCGGACGGAAGATGCCGATCAAGATGACCGCGTGCGACTCCG 3891 Query 12838 GTGGTAAGGCAGGCGTGACGGCGAACGCATACGCGTATTGGCGCAAGCTG 12887 | ||| | || ||||| || | ||||| |||| ||||| || || ||| Sbjct 3890 GCGGTGAAGCGGGCGTTACCGGCAACGCGTACGAGTATTACCGGAAACTG 3841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198947048567778