Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq13163 176 1e-38 seq13245 140 8e-28 >seq13163 Length=1194233 Score = 176 bits (194), Expect = 1e-38 Identities = 172/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||||| | || | ||| || || || || |||||||| ||||| || | ||| || Sbjct 709833 CGAAGTCGCAAAACTAAGTGGAGCGTAGATTCCTTTTGGATATTATAGTCGGAAAGAGTT 709892 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 || || ||||||||||| ||||| |||||||| | || || || || ||||||| ||| Sbjct 709893 CTGCCGTCTTCCAGCTGTTTGCCAGCGAAGATTAAACGCTGCTGATCCGGAGGAATTCCC 709952 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || ||||||||||| || ||||||||||| |||||||| || ||| || ||||| Sbjct 709953 TCTTTGTCCTGGATTTTGGCCTTCACGTTTTCTATGGTGTCGGAAGCTTCGACTTCGAGG 710012 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || || ||||||||||||||||| || | ||||||| Sbjct 710013 GTGATGGTTTTGCCCGTGAGAGTCTTTACGAAGATCTGCATT 710054 Score = 147 bits (162), Expect = 5e-30 Identities = 146/189 (77%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | ||| ||||| |||||||| || |||||||| ||||| || Sbjct 711584 TTCTGGATGTTGTAGTCTGAAAGAGTCCTGCCATCTTCGAGTTGCTTGCCGGCGAAAATC 711643 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | || ||||| || || |||| || || ||||||||||| || ||||||||||| Sbjct 711644 AAACGCTGTTGATCCGGGGGAATCCCCTCTTTGTCCTGGATTTTGGCCTTCACGTTTTCA 711703 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 |||||||| || ||| || || || ||||| || || ||||| ||||||||||| || Sbjct 711704 ATGGTGTCCGAAGCTTCGACTTCCAGGGTGATGGTTTTGCCCGTTAGAGTCTTTACGAAG 711763 Query 211107 ACCTGCATT 211115 | ||||||| Sbjct 711764 ATCTGCATT 711772 >seq13245 Length=2836997 Score = 140 bits (154), Expect = 8e-28 Identities = 145/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 |||| || ||||| || || | || || | |||||| |||||||| ||||| ||||||| Sbjct 675195 CTTTCTGTATGTTGTAGTCGGAGAGTGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGA 675136 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 | || || || || ||||| || | || ||||||||||||||||| || ||||| | Sbjct 675135 TGAGCCGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCT 675076 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 |||| || || || || |||||||| ||||| ||||| |||||||| ||||| || | Sbjct 675075 CGATAGTATCGGACGCCTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 675016 Query 211105 ACACCTGCAT 211114 | | |||||| Sbjct 675015 AGATCTGCAT 675006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158955097023170