Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq13163 123 2e-23 seq13245 100 2e-16 >seq13163 Length=1194233 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || || |||||||| ||||| ||||| |||||||| || | | Sbjct 710054 AATGCAGATCTTCGTAAAGACTCTCACGGGCAAAACCATCACCCTCGAAGTCGAAGCTTC 709995 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | |||| | || ||||| |||||||| || | || || ||||| Sbjct 709994 CGACACCATAGAAAACGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCTCCGGATCA 709935 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||||||| || || |||||||| |||||||||| | ||| | ||| || || Sbjct 709934 GCAGCGTTTAATCTTCGCTGGCAAACAGCTGGAAGACGGCAGAACTCTTTCCGACTATAA 709875 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || ||||| || || || | || |||||||| Sbjct 709874 TATCCAAAAGGAATCTACGCTCCACTTAGTTTT 709842 Score = 109 bits (120), Expect = 4e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| || || || ||||| ||||| |||||||| ||||| ||||| || || | Sbjct 712002 AACATGCAAATCTTTGTGAAAACTCTCACTGGAAAAACCATCACCCTCGAGGTAGAAGCT 711943 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | |||||| |||||| | ||| || || || ||||||||| | || || ||| Sbjct 711942 TCTGACACTATTGAAAATGTCAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCGGAT 711883 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || ||| | || ||||| ||||| ||||||||||||| | || | ||| ||| Sbjct 711882 CAGCAACGTCTGATCTTTGCTGGCAAGCAACTGGAAGACGGCAGAACCCTTTCCGACTAC 711823 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || || || || Sbjct 711822 AACATCCAGAAGGAATCTAC 711803 Score = 107 bits (118), Expect = 1e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || || || ||||| ||||| ||||| || ||||| || | | Sbjct 711772 AATGCAGATCTTCGTAAAGACTCTAACGGGCAAAACCATCACCCTGGAAGTCGAAGCTTC 711713 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||||| | || ||||| |||||||| || | || || ||||| Sbjct 711712 GGACACCATTGAAAACGTGAAGGCCAAAATCCAGGACAAAGAGGGGATTCCCCCGGATCA 711653 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||||| || || |||||||| ||||| ||||| | | ||| | || ||||| Sbjct 711652 ACAGCGTTTGATTTTCGCCGGCAAGCAACTCGAAGATGGCAGGACTCTTTCAGACTACAA 711593 Query 23790 CATACAAAA 23798 ||| || || Sbjct 711592 CATCCAGAA 711584 >seq13245 Length=2836997 Score = 100 bits (110), Expect = 2e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||| ||||| || || | | Sbjct 675006 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTGGAGGCGTCC 675065 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| | || | | || || || ||||| || || | ||||| ||||| Sbjct 675066 GATACTATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCAG 675125 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || ||||||||||| ||||| || | |||||| | ||| |||||| Sbjct 675126 CAGCGGCTCATCTTCGCCGGCAAACAGCTGGAGGATGGACGCACACTCTCCGACTACAAC 675185 Query 23791 ATACAAAAAG 23800 ||||| |||| Sbjct 675186 ATACAGAAAG 675195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337954983775064