Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06]
13,258 sequences; 287,900,827 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq13163 123 2e-23
seq13245 100 2e-16
>seq13163
Length=1194233
Score = 123 bits (136), Expect = 2e-23
Identities = 155/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||| ||||| || || |||||||| ||||| ||||| |||||||| || | |
Sbjct 710054 AATGCAGATCTTCGTAAAGACTCTCACGGGCAAAACCATCACCCTCGAAGTCGAAGCTTC 709995
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | |||| | || ||||| |||||||| || | || || |||||
Sbjct 709994 CGACACCATAGAAAACGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCTCCGGATCA 709935
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||||||||| || || |||||||| |||||||||| | ||| | ||| || ||
Sbjct 709934 GCAGCGTTTAATCTTCGCTGGCAAACAGCTGGAAGACGGCAGAACTCTTTCCGACTATAA 709875
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822
|| ||||| || || || | || ||||||||
Sbjct 709874 TATCCAAAAGGAATCTACGCTCCACTTAGTTTT 709842
Score = 109 bits (120), Expect = 4e-19
Identities = 144/200 (72%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| ||||| || || || ||||| ||||| |||||||| ||||| ||||| || || |
Sbjct 712002 AACATGCAAATCTTTGTGAAAACTCTCACTGGAAAAACCATCACCCTCGAGGTAGAAGCT 711943
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| |||||| |||||| | ||| || || || ||||||||| | || || |||
Sbjct 711942 TCTGACACTATTGAAAATGTCAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCGGAT 711883
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|| || ||| | || ||||| ||||| ||||||||||||| | || | ||| |||
Sbjct 711882 CAGCAACGTCTGATCTTTGCTGGCAAGCAACTGGAAGACGGCAGAACCCTTTCCGACTAC 711823
Query 23788 AACATACAAAAAGAGTCCAC 23807
||||| || || || || ||
Sbjct 711822 AACATCCAGAAGGAATCTAC 711803
Score = 107 bits (118), Expect = 1e-18
Identities = 137/189 (72%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||| ||||| || || || ||||| ||||| ||||| || ||||| || | |
Sbjct 711772 AATGCAGATCTTCGTAAAGACTCTAACGGGCAAAACCATCACCCTGGAAGTCGAAGCTTC 711713
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|||||| |||||| | || ||||| |||||||| || | || || |||||
Sbjct 711712 GGACACCATTGAAAACGTGAAGGCCAAAATCCAGGACAAAGAGGGGATTCCCCCGGATCA 711653
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||||||| || || |||||||| ||||| ||||| | | ||| | || |||||
Sbjct 711652 ACAGCGTTTGATTTTCGCCGGCAAGCAACTCGAAGATGGCAGGACTCTTTCAGACTACAA 711593
Query 23790 CATACAAAA 23798
||| || ||
Sbjct 711592 CATCCAGAA 711584
>seq13245
Length=2836997
Score = 100 bits (110), Expect = 2e-16
Identities = 136/190 (72%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||||||||||| || || ||||| ||||| || || | |
Sbjct 675006 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTGGAGGCGTCC 675065
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| ||| | || | | || || || ||||| || || | ||||| |||||
Sbjct 675066 GATACTATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCAG 675125
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||||| | || || ||||||||||| ||||| || | |||||| | ||| ||||||
Sbjct 675126 CAGCGGCTCATCTTCGCCGGCAAACAGCTGGAGGATGGACGCACACTCTCCGACTACAAC 675185
Query 23791 ATACAAAAAG 23800
||||| ||||
Sbjct 675186 ATACAGAAAG 675195
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337954983775064
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |