Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06]
13,258 sequences; 287,900,827 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq13163 149 1e-30
seq13223 122 2e-22
seq12990 116 9e-21
seq13245 95.1 3e-14
seq13027 89.7 1e-12
seq13016 84.2 5e-11
>seq13163
Length=1194233
Score = 149 bits (164), Expect = 1e-30
Identities = 166/222 (75%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
||||||| || || | |||||| || ||||| ||||||| ||| || |||| | ||||
Sbjct 709833 CGAAGTCGCAAAACTAAGTGGAGCGTAGATTCCTTTTGGATATTATAGTCGGAAAGAGTT 709892
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
|| || ||||| ||||| || ||||||||||| | || || || || || ||||| ||
Sbjct 709893 CTGCCGTCTTCCAGCTGTTTGCCAGCGAAGATTAAACGCTGCTGATCCGGAGGAATTCCC 709952
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
|| ||||| ||||| || |||||| ||| |||||||| || | ||| || || |
Sbjct 709953 TCTTTGTCCTGGATTTTGGCCTTCACGTTTTCTATGGTGTCGGAAGCTTCGACTTCGAGG 710012
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
||||| || |||||||| | ||| |||| ||| | ||||||
Sbjct 710013 GTGATGGTTTTGCCCGTGAGAGTCTTTACGAAGATCTGCATT 710054
Score = 134 bits (148), Expect = 3e-26
Identities = 164/224 (73%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| || | |||||| || || || || ||||| || |||| ||||| |||| | |||
Sbjct 711779 CGGAGACGCAGGACCAGATGAAGCGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTT 711838
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
|| || ||||| || ||||| ||||| ||||| || ||||| || || || |||||||||
Sbjct 711839 CTGCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGGAGGAATACCT 711898
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
|| || ||||||||||| || ||| ||| || ||||| || | ||| || || |
Sbjct 711899 TCTTTATCTTGGATCTTAGCTTTGACATTTTCAATAGTGTCAGAAGCTTCTACCTCGAGG 711958
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| || || || || | |||||| | || | |||||| ||
Sbjct 711959 GTGATGGTTTTTCCAGTGAGAGTTTTCACAAAGATTTGCATGTT 712002
>seq13223
Length=1962013
Score = 122 bits (134), Expect = 2e-22
Identities = 94/112 (84%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530
|| |||||||| || |||||||| |||||||| ||||||||||||||||| || |||||
Sbjct 1810352 AAGATTTGACCGTCGGTAATAGAAATAACATTGGTAGGGATATAAGCAGACACGTCACCA 1810411
Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTT 4582
||||| ||||||| |||||| || || || | || |||||||| |||||||
Sbjct 1810412 GCTTGCGTTTCGATAACAGGCAAAGCGGTCAACGAGCCACCACCTAAATTTT 1810463
>seq12990
Length=87999
Score = 116 bits (128), Expect = 9e-21
Identities = 113/143 (79%), Gaps = 2/143 (1%)
Strand=Plus/Plus
Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784
|| || ||| ||||||| || || ||||| ||| ||||||||||||| ||||||||||
Sbjct 85780 ATGTCAAGGAGTGGTAAGGTTTTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCT 85839
Query 7785 TATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGA 7844
| | | |||||| || ||||||||||||| |||||| |||||| | |||| |||
Sbjct 85840 TGTGCGGGTCCCCGTCAATTCCTTTGAGTTTTAATCTTGCGACCGTAGTCCCCAGGCGGA 85899
Query 7845 ATATTT-ACGCGTTAGCT-TAAT 7865
|| ||| ||||||||||| ||||
Sbjct 85900 ATGTTTAACGCGTTAGCTGTAAT 85922
Score = 89.7 bits (98), Expect = 1e-12
Identities = 82/100 (82%), Gaps = 3/100 (3%)
Strand=Plus/Minus
Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825
|||||| ||||||||||| | ||| ||||| | |||| ||| | || ||| | |||||
Sbjct 86453 TGAGAGGATGATCAGCCATACTGGAACTGAGATACGGTCCA-GACTCCTACGGGAGGCAG 86395
Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAG 6865
|||||| ||||||| |||||||||||||||| ||||| ||
Sbjct 86394 CAGTGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAG 86355
>seq13245
Length=2836997
Score = 95.1 bits (104), Expect = 3e-14
Identities = 135/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583
|||| || | ||||| |||| | || | ||||| || ||||| || || |||||||
Sbjct 675195 CTTTCTGTATGTTGTAGTCGGAGAGTGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGA 675136
Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT 225643
| || || || || || ||||| || || |||||||| |||||||| ||| || |
Sbjct 675135 TGAGCCGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCT 675076
Query 225644 CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGA 225703
|||| || || || | ||||| || | ||||| ||||||||||| | || || | ||
Sbjct 675075 CGATAGTATCGGACGCCTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 675016
Query 225704 ACACTTGCAT 225713
| | |||||
Sbjct 675015 AGATCTGCAT 675006
>seq13027
Length=117870
Score = 89.7 bits (98), Expect = 1e-12
Identities = 86/109 (79%), Gaps = 1/109 (1%)
Strand=Plus/Plus
Query 372598 TAAGCTGCTATAAG-CAATTACTTATAGGTGTAACAGAATAGAGGGTAGCGACTGTTTAC 372656
||| ||||| | || ||| || |||||| ||| ||||| | |||||||||||||||
Sbjct 16725 TAACCTGCTTTTAGGCAACTATGAGTAGGTGGCACAAAATAGGGAGTAGCGACTGTTTAC 16784
Query 372657 TAAAAACACAGGACTCCGCTAAGTTGTAAAACGATGTATAGGGTCTGAC 372705
|||||||||||||||| || || |||| || ||||||||||||||
Sbjct 16785 TAAAAACACAGGACTCTGCAAACACGTAAGTGGAAGTATAGGGTCTGAC 16833
>seq13016
Length=109399
Score = 84.2 bits (92), Expect = 5e-11
Identities = 73/91 (80%), Gaps = 0/91 (0%)
Strand=Plus/Minus
Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530
|| || || ||||| ||||| || ||||||||||| || | ||| ||||| ||||||||
Sbjct 15231 AAGATCTGCCCATCGGTAATTGAAATAACATTTGTTGGCACATATGCAGATACATCACCA 15172
Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTA 4561
||||| |||||||||| || || || ||||
Sbjct 15171 GCTTGAGTTTCGACAATCGGCAAAGCAGTTA 15141
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192328626961052
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |