Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq13163 149 1e-30 seq13223 122 2e-22 seq12990 116 9e-21 seq13245 95.1 3e-14 seq13027 89.7 1e-12 seq13016 84.2 5e-11 >seq13163 Length=1194233 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||||| || || | |||||| || ||||| ||||||| ||| || |||| | |||| Sbjct 709833 CGAAGTCGCAAAACTAAGTGGAGCGTAGATTCCTTTTGGATATTATAGTCGGAAAGAGTT 709892 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || || ||||| ||||| || ||||||||||| | || || || || || ||||| || Sbjct 709893 CTGCCGTCTTCCAGCTGTTTGCCAGCGAAGATTAAACGCTGCTGATCCGGAGGAATTCCC 709952 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || ||||| ||||| || |||||| ||| |||||||| || | ||| || || | Sbjct 709953 TCTTTGTCCTGGATTTTGGCCTTCACGTTTTCTATGGTGTCGGAAGCTTCGACTTCGAGG 710012 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || |||||||| | ||| |||| ||| | |||||| Sbjct 710013 GTGATGGTTTTGCCCGTGAGAGTCTTTACGAAGATCTGCATT 710054 Score = 134 bits (148), Expect = 3e-26 Identities = 164/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | |||||| || || || || ||||| || |||| ||||| |||| | ||| Sbjct 711779 CGGAGACGCAGGACCAGATGAAGCGTAGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTT 711838 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || || ||||| || ||||| ||||| ||||| || ||||| || || || ||||||||| Sbjct 711839 CTGCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGACGTTGCTGATCCGGAGGAATACCT 711898 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || || ||||||||||| || ||| ||| || ||||| || | ||| || || | Sbjct 711899 TCTTTATCTTGGATCTTAGCTTTGACATTTTCAATAGTGTCAGAAGCTTCTACCTCGAGG 711958 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || || || || | |||||| | || | |||||| || Sbjct 711959 GTGATGGTTTTTCCAGTGAGAGTTTTCACAAAGATTTGCATGTT 712002 >seq13223 Length=1962013 Score = 122 bits (134), Expect = 2e-22 Identities = 94/112 (84%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || |||||||| || |||||||| |||||||| ||||||||||||||||| || ||||| Sbjct 1810352 AAGATTTGACCGTCGGTAATAGAAATAACATTGGTAGGGATATAAGCAGACACGTCACCA 1810411 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTT 4582 ||||| ||||||| |||||| || || || | || |||||||| ||||||| Sbjct 1810412 GCTTGCGTTTCGATAACAGGCAAAGCGGTCAACGAGCCACCACCTAAATTTT 1810463 >seq12990 Length=87999 Score = 116 bits (128), Expect = 9e-21 Identities = 113/143 (79%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784 || || ||| ||||||| || || ||||| ||| ||||||||||||| |||||||||| Sbjct 85780 ATGTCAAGGAGTGGTAAGGTTTTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCT 85839 Query 7785 TATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGA 7844 | | | |||||| || ||||||||||||| |||||| |||||| | |||| ||| Sbjct 85840 TGTGCGGGTCCCCGTCAATTCCTTTGAGTTTTAATCTTGCGACCGTAGTCCCCAGGCGGA 85899 Query 7845 ATATTT-ACGCGTTAGCT-TAAT 7865 || ||| ||||||||||| |||| Sbjct 85900 ATGTTTAACGCGTTAGCTGTAAT 85922 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/100 (82%), Gaps = 3/100 (3%) Strand=Plus/Minus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| ||||||||||| | ||| ||||| | |||| ||| | || ||| | ||||| Sbjct 86453 TGAGAGGATGATCAGCCATACTGGAACTGAGATACGGTCCA-GACTCCTACGGGAGGCAG 86395 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAG 6865 |||||| ||||||| |||||||||||||||| ||||| || Sbjct 86394 CAGTGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAG 86355 >seq13245 Length=2836997 Score = 95.1 bits (104), Expect = 3e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583 |||| || | ||||| |||| | || | ||||| || ||||| || || ||||||| Sbjct 675195 CTTTCTGTATGTTGTAGTCGGAGAGTGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGA 675136 Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT 225643 | || || || || || ||||| || || |||||||| |||||||| ||| || | Sbjct 675135 TGAGCCGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCT 675076 Query 225644 CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGA 225703 |||| || || || | ||||| || | ||||| ||||||||||| | || || | || Sbjct 675075 CGATAGTATCGGACGCCTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 675016 Query 225704 ACACTTGCAT 225713 | | ||||| Sbjct 675015 AGATCTGCAT 675006 >seq13027 Length=117870 Score = 89.7 bits (98), Expect = 1e-12 Identities = 86/109 (79%), Gaps = 1/109 (1%) Strand=Plus/Plus Query 372598 TAAGCTGCTATAAG-CAATTACTTATAGGTGTAACAGAATAGAGGGTAGCGACTGTTTAC 372656 ||| ||||| | || ||| || |||||| ||| ||||| | ||||||||||||||| Sbjct 16725 TAACCTGCTTTTAGGCAACTATGAGTAGGTGGCACAAAATAGGGAGTAGCGACTGTTTAC 16784 Query 372657 TAAAAACACAGGACTCCGCTAAGTTGTAAAACGATGTATAGGGTCTGAC 372705 |||||||||||||||| || || |||| || |||||||||||||| Sbjct 16785 TAAAAACACAGGACTCTGCAAACACGTAAGTGGAAGTATAGGGTCTGAC 16833 >seq13016 Length=109399 Score = 84.2 bits (92), Expect = 5e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || || || ||||| ||||| || ||||||||||| || | ||| ||||| |||||||| Sbjct 15231 AAGATCTGCCCATCGGTAATTGAAATAACATTTGTTGGCACATATGCAGATACATCACCA 15172 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTA 4561 ||||| |||||||||| || || || |||| Sbjct 15171 GCTTGAGTTTCGACAATCGGCAAAGCAGTTA 15141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192328626961052