Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq13202 129 4e-25 >seq13202 Length=1347106 Score = 129 bits (142), Expect = 4e-25 Identities = 181/254 (71%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 27472 CCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCG 27531 |||| ||| ||| | |||||| ||||||| || || || |||| ||| ||||| || Sbjct 1326192 CCCGTGTAATCTGTGCGCATGTCTTTGTACTCGGCGCCAAAGTGCCGCCACTGGAAGCCA 1326133 Query 27532 TACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCT 27591 || || || ||||| || || || || || | | |||||| | | |||||| || | Sbjct 1326132 TAGACAGGCCCCAGATCACCTTCCTCTCTATCCGTGAAGCCGCACGAGTCCAAGAAAGCC 1326073 Query 27592 CTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTG 27651 | ||||| || ||||||| || | || ||||| || | || ||||||||||| || Sbjct 1326072 CGCGAACCATTCTCGTCCCAAATGTGAACACCCTTATCCGTTAGTTCTTTGGAGTTCGTC 1326013 Query 27652 GACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTC 27711 || ||| ||| ||||||| ||| ||||| || || || ||| || |||||||| || Sbjct 1326012 GATCCTTTGATAAACCACAACAGTTCCTCGACCACCGCACGCCAGAACACCCTCTTAGTT 1325953 Query 27712 GTGAGGAGGGGAAA 27725 || || | ||||| Sbjct 1325952 GTAAGTAATGGAAA 1325939 Score = 95.1 bits (104), Expect = 9e-15 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || ||||| || ||||| |||||||| | || || || || ||| |||||||| || Sbjct 1326550 AGTCCGGTAACATGAGCGATCATGTAGATCAGCAGGGAATACGAGGCTATGTTAAATGGC 1326491 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || ||||||||| | ||||| || ||||| || | ||||| | | | Sbjct 1326490 ACTCCTAGACCCATGTCCGCGCTTCTCTGATAAAGCTGCGCGGACAATTCTCCGTTGTTC 1326431 Query 27328 ACGTAAAACTG-ACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGG 27386 ||||||||||| ||| | | |||||||||| || | ||||| | || | || Sbjct 1326430 ACGTAAAACTGCACAAAAG-CGTGGCACGGTGGCAATGCCATCTTCGGAATATCAATCGG 1326372 Query 27387 GTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGG 27422 |||||||| ||| ||||||||| ||||| || || Sbjct 1326371 ATTCCAGGCTGACATGATGATGCGTCTGTCCTCCGG 1326336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369447494333798