Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq13189 111 2e-19 >seq13189 Length=1149699 Score = 111 bits (122), Expect = 2e-19 Identities = 239/356 (67%), Gaps = 6/356 (2%) Strand=Plus/Minus Query 77525 ACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAAT 77584 |||||||||||| ||||| | ||| || |||| | ||| | |||||||| |||| | Sbjct 401880 ACCAATAGGTCTGTGTCTTTGATTAGATGTTTTCGTCTCTTGGATAGGATAGAAATTTAC 401821 Query 77585 GTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAA 77644 ||| || | ||||| ||||| | || | ||| | || ||| |||||| ||| Sbjct 401820 GTCGATGACTTTATCTAGATTGCGGGTGACGATTTTTGCGACTGTCTTAAGTTTATCAAA 401761 Query 77645 ATCAAATCTTC---CATCTA---TAACAAACATGTTCAAAGCTATAGATGCTAGATTACA 77698 ||| || || | ||| | || |||||||| | ||| ||||| |||| ||| || Sbjct 401760 ATCGAAAGTTTTGGCGTCTGCGTTGACGAACATGTTGACAGCGATAGACGCTAAATTGCA 401701 Query 77699 AACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTT 77758 || || ||||| | || |||||| || | |||||| || | ||| || ||||| Sbjct 401700 TACGGCGACCTCTCCGGGACCGGAATATTGAATAACCTCGGTGCACAAATTGCTGCATTT 401641 Query 77759 GATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAA 77818 ||||||||| | | || || || ||| ||| || ||| || ||||| ||| | Sbjct 401640 GATAGTGCCTACGTGCTGATGATTCGATTTTCGATTACAGTGGTCTTTGTAAAGCATATA 401581 Query 77819 CGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTT 77874 || || || ||||| | || ||| || ||| | | ||| | | |||| |||| Sbjct 401580 AGGCGTTCCAGTTTCCACTTGGGATCTGAGAATGGCGTGCCATATGGCTCTGGCTT 401525 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 77109 AGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTG 77168 || || ||||| || || |||||||||||||||||| | | ||| |||||| | Sbjct 402434 AGGTGGGGATTGACAATGACAAATTCTCCAGACAATACGCGTCTCACGTAGATATTAGTC 402375 Query 77169 GTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATA 77228 || || ||||| | || || || || || ||||| || || || || || ||||||||| Sbjct 402374 GTGTAGGGTTCAATGGACTCGTTATTCCCTAAAATCTGTGCCGTCGAGGCTGTTGGCATA 402315 Query 77229 GGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTC 77288 || || | || | | |||||| | || || || |||||| | || | | | | Sbjct 402314 GGCGCTATTAAAAGAGAATTTCTTACTCCGTGCTTTGCGATTTTCTTCTTCAATTCGTCC 402255 Query 77289 CAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAAT 77338 |||||||| | ||||| || ||| | ||| | |||||||| || || Sbjct 402254 CAATCCCATAAATCTGTCGGCTTAACGTTCCACATGTCGTATTGGAGGAT 402205 Score = 84.2 bits (92), Expect = 3e-11 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 78417 GTCGGAGATGCATGCGTAAACCATTTTTCAGA-AAGTAGATTGTATGTTTCAATAGCTGA 78475 || || || ||||| || || | |||||| || || |||||||||||| || || Sbjct 400697 GTTGGTGAAGCATGTGTGAAATAACGTTCAGACAAATA-ATTGTATGTTTCTATGGCCCT 400639 Query 78476 TTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTC 78535 || ||||| | ||||| || || || || | |||||||||||| ||||| | || Sbjct 400638 GTCGATGTCGTTCTCGTGAATGCCAACAGCCACTCTCATCAACATATGTTGAGGCCGCTC 400579 Query 78536 AACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATA 78595 | |||| ||| || ||||||| || | | || | ||||||||||||| ||| Sbjct 400578 CGCTATCTTGCCATTGATCTTCAACAGATAGCTTCTCTCGAGCGTTTTAAAACCAATATA 400519 Query 78596 GTTGTA--TGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCT 78644 ||||| ||||| |||| ||||| || ||| |||| | | ||| ||| Sbjct 400518 ATTGTAGTTGAAA--TCTCGATCGTATATTATAGCAGAGTCCAATTTTTCT 400470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694553676013120