Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vollenhovia_20emeryi_20[refseq_20GCF_5F000949405.1_202015-03-06] 13,258 sequences; 287,900,827 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq13189 105 1e-17 >seq13189 Length=1149699 Score = 105 bits (116), Expect = 1e-17 Identities = 240/357 (67%), Gaps = 8/357 (2%) Strand=Plus/Minus Query 76120 ACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAAT 76179 |||||||||||| ||||| | ||| || ||| | ||| | ||||| || |||| | Sbjct 401880 ACCAATAGGTCTGTGTCTTTGATTAGATGTTTTCGTCTCTTGGATAGGATAGAAATTTAC 401821 Query 76180 ATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAA 76239 || || | ||||| ||||| | | || | ||| | || ||| ||||| ||| Sbjct 401820 GTCGATGACTTTATCTAGATTGCGGGTGACGATTTTTGCGACTGTCTTAAGTTTATCAAA 401761 Query 76240 ATCAAA---TTTTCCATCTA---TCACAAACATATTAAGAGCTATAGATGCTAGATTACA 76293 ||| || ||| | ||| | || ||||| || | ||| ||||| |||| ||| || Sbjct 401760 ATCGAAAGTTTTGGCGTCTGCGTTGACGAACATGTTGACAGCGATAGACGCTAAATTGCA 401701 Query 76294 AACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTT 76353 ||||| ||||| | | || |||||| || | ||| ||||| | ||| || || || Sbjct 401700 TACGGCGACCTCTCCGGGACCGGAATATTGAATAACCTCGGTGCACAAATTGCTGCATTT 401641 Query 76354 GATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTG-TTACATGAGTCCTTATAAAGAACAA 76412 |||||| || | | || || || | |||| | ||||| ||| || ||||| | | Sbjct 401640 GATAGTGCCTACGTGCTGATGATT-CGATTTTCGATTACAGTGGTCTTTGTAAAGCATAT 401582 Query 76413 ACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTT 76469 | || ||||||||||| | || ||| || ||| | | ||| | | |||| |||| Sbjct 401581 AAGGCGTTCCAGTTTCCACTTGGGATCTGAGAATGGCGTGCCATATGGCTCTGGCTT 401525 Score = 95.1 bits (104), Expect = 2e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 75958 ATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTA 76017 ||| ||||| ||||| || | | ||||||| ||||||||| || || || || ||||| Sbjct 402113 ATACGTTTCATAAGTGCCCTTTTGCTCAGCTAATTCGCAACTAGCTTCCAAGGCGCCGTA 402054 Query 76018 ATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATA 76077 ||||| ||||||||| || || |||| || || | |||||| || || |||||||| Sbjct 402053 ATAAAGTGTTTCGAAGATTTTTATATTGAGTTCCTTCGCTTCTTTGCTCTCGAAAGGATA 401994 Query 76078 ATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACC 76122 | | || | ||||||||||| | || || | || ||||| Sbjct 401993 TCGCATTAGTAGGAATGCATCTGCCAAACCTTGTATCCCGATACC 401949 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 75704 AGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTG 75763 || || ||||| ||||| |||||||||||||||||| | || ||| |||||| | Sbjct 402434 AGGTGGGGATTGACAATGACAAATTCTCCAGACAATACGCGTCTCACGTAGATATTAGTC 402375 Query 75764 GTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATA 75823 || || ||||| | || || || || || ||||| || || || || || || |||||| Sbjct 402374 GTGTAGGGTTCAATGGACTCGTTATTCCCTAAAATCTGTGCCGTCGAGGCTGTTGGCATA 402315 Query 75824 GGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTC 75883 || || | || | | |||||| | || || || |||||| | || | | | | Sbjct 402314 GGCGCTATTAAAAGAGAATTTCTTACTCCGTGCTTTGCGATTTTCTTCTTCAATTCGTCC 402255 Query 75884 CAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAAT 75933 |||||||| | ||||| || ||| | ||| | |||||||| || || Sbjct 402254 CAATCCCATAAATCTGTCGGCTTAACGTTCCACATGTCGTATTGGAGGAT 402205 Score = 87.8 bits (96), Expect = 3e-12 Identities = 157/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 77000 GCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGA-AAGTAGATTGTATGT 77058 || || |||| || || || ||||| ||||| | |||||| || || ||||||||| Sbjct 400709 GCGTTGAACAGCGTTGGTGAAGCATGTGTGAAATAACGTTCAGACAAATA-ATTGTATGT 400651 Query 77059 TTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATG 77118 ||| || | || || || | ||||| || ||||| || | |||||||||||| Sbjct 400650 TTCTATGGCCCTGTCGATGTCGTTCTCGTGAATGCCAACAGCCACTCTCATCAACATATG 400591 Query 77119 CTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTT 77178 ||||| || || | |||| ||| || ||||||| || | | || | ||||| Sbjct 400590 TTGAGGCCGCTCCGCTATCTTGCCATTGATCTTCAACAGATAGCTTCTCTCGAGCGTTTT 400531 Query 77179 AAAACCAAAATAGTTGTA--TGAAAAGTCTCTTTCGTAAATAATA 77221 |||||||| ||| ||||| ||||| |||| ||||| || ||| Sbjct 400530 AAAACCAATATAATTGTAGTTGAAA--TCTCGATCGTATATTATA 400488 Score = 84.2 bits (92), Expect = 3e-11 Identities = 101/136 (74%), Gaps = 10/136 (7%) Strand=Plus/Minus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578 ||||||||| || ||||||||||| |||| || ||| |||| | ||||||||||| Sbjct 401355 TTCAAATTCCTCGCCCCAAACATCGGCCAAGCCGGGAGATTCGTATGGACACATCAA--- 401299 Query 76579 CCACTCACCATCT--TCCTTA---ACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCA 76633 |||| ||||| || ||| | ||||||||||| ||||| |||||||| || || Sbjct 401298 --ACTCCACATCTCGTCATTATGCATACGTTTCATAAAAAGATCCGGTATCCAGAGGCCA 401241 Query 76634 ATAAATAGATCTCGGG 76649 ||| | ||||||| Sbjct 401240 TAAAACAAGTCTCGGG 401225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712816248946560