Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Wasmannia_20auropunctata_20[refseq_20GCF_5F000956235.1_202015-03-17] 77,788 sequences; 324,120,201 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq8374 123 3e-23 seq6487 102 1e-16 seq34014 96.9 4e-15 seq34013 84.2 3e-11 >seq8374 Length=807232 Score = 123 bits (136), Expect = 3e-23 Identities = 143/191 (75%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 24401 AACATATGTATCAATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATT 24458 || ||| || ||||| | ||||| |||||| || ||||| || ||||| ||||| ||| Sbjct 791820 AATATAAGTTTCAATGAGCAAAGA--ATACATCTCAGAATGGATATTTTCTATGGCAATT 791763 Query 24459 TGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCT 24518 ||||| ||||||||||| | || || || || | ||||| || |||| ||| | Sbjct 791762 TGAAAGCCGTAGAAACAACGTGCTTCAGTGATTTTCACTTCCTGACTGAATCTTTCAATT 791703 Query 24519 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 24578 ||||||||||| || || |||||| || || ||||| ||||| ||||| |||||| Sbjct 791702 AAATTTTCATTAACAATACCGTCAGAAGCGGCGAAAAATGCCAAGACATGAGAGATAAAA 791643 Query 24579 TATTTTTCGTC 24589 ||||| ||||| Sbjct 791642 TATTTCTCGTC 791632 >seq6487 Length=3923646 Score = 102 bits (112), Expect = 1e-16 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 54443 GTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCGATAGCTGA 54501 || || ||||||||||| || || || || || || ||| |||||||| || ||| Sbjct 1176543 GTTGGCGAAGCGTGCGTGAAGTATCGCTCGGACAAATA-ATTATACGTCTCTATGGCTTT 1176601 Query 54502 GTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 54561 ||| || || || ||||| || | || || | ||| |||||||||||||||||||| Sbjct 1176602 GTCGATGTCATTTTCGTGAATCCCAATGGCCACTCTCATCAACATGTGCTGAGGTCTTTC 1176661 Query 54562 AACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 54621 || |||||| ||| |||||||||| ||| | | || | |||||||| || | || Sbjct 1176662 GACTATCTTGCCGTTGATTTTCAGCAGATAGCTTCTCTCGAGCGTTTTAAAGCCGATGTA 1176721 Query 54622 GTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 || || ||||| || ||||| || || Sbjct 1176722 ATTATAATTGAAGTCCCGATCGTATATTAT 1176751 Score = 84.2 bits (92), Expect = 3e-11 Identities = 110/147 (75%), Gaps = 4/147 (3%) Strand=Plus/Plus Query 53939 GTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA 53998 ||||||||| || ||| || || |||||||||| |||| || ||| ||||| ||| Sbjct 1175989 GTATACAATTCTTTAAATTCATCGCCCCAAACATCAGCCAAGCCGGGAGATTCACAAGGA 1176048 Query 53999 CACATCAACGACCAC-TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCA 54057 |||||||| |||| ||| |||| | | ||| |||| |||||| ||||| || ||||| Sbjct 1176049 CACATCAAGCTCCACATCT-CGTCGTTGTACACACGTTCCATAAAAAGATCTGGTATCCA 1176107 Query 54058 AAGAGCTATA-AATAGATCTCTGGTTC 54083 || || || |||| ||||||| || Sbjct 1176108 CAG-GCCGTAGAATAAGTCTCTGGCTC 1176133 >seq34014 Length=448 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 54443 GTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCGATAGCTGA 54501 || || || |||||||| || || || || || || ||| |||||||| || ||| Sbjct 445 GTTGGCGAGGCGTGCGTGAAGTATCGCTCGGACAAATA-ATTATACGTCTCTATGGCTTT 387 Query 54502 GTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 54561 ||| || || || ||||| || || || || | ||| |||||||||||||| || || Sbjct 386 GTCGATGTCATTTTCGTGAATGCCAACGGCCACTCTCATCAACATGTGCTGAGGCCTCTC 327 Query 54562 AACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 54621 || |||||| ||| ||||||| || ||| | | || | |||||||| |||| ||| Sbjct 326 GACTATCTTGCCGTTGATTTTCAACAGATAGCTTCTCTCGAGCGTTTTAAAGCCAATATA 267 Query 54622 GTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 || || ||||| || ||||| || || Sbjct 266 ATTATAATTGAAGTCCCGATCGTATATTAT 237 >seq34013 Length=456 Score = 84.2 bits (92), Expect = 3e-11 Identities = 110/147 (75%), Gaps = 4/147 (3%) Strand=Plus/Minus Query 53939 GTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA 53998 ||||||||| || ||| || || |||||||||| |||| || ||| ||||| ||| Sbjct 390 GTATACAATTCTTTAAATTCATCGCCCCAAACATCAGCCAAGCCGGGAGATTCACAAGGA 331 Query 53999 CACATCAACGACCAC-TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCA 54057 |||||||| |||| ||| |||| | | ||| |||| |||||| ||||| || ||||| Sbjct 330 CACATCAAGCTCCACATCT-CGTCGTTGTACACACGTTCCATAAAAAGATCTGGTATCCA 272 Query 54058 AAGAGCTATA-AATAGATCTCTGGTTC 54083 || || || |||| ||||||| || Sbjct 271 CAG-GCCGTAGAATAAGTCTCTGGCTC 246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593144294802240